Gene Shewmr7_1961 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1961 
Symbol 
ID4258106 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp2315313 
End bp2316065 
Gene Length753 bp 
Protein Length250 aa 
Translation table11 
GC content45% 
IMG OID638122627 
Productfumarate/nitrate reduction transcriptional regulator 
Protein accessionYP_738007 
Protein GI114047457 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00754009 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACAATAG AGCAGAATAA AAACCGTCGT CCCGCCGCGA GTGGGTGCAC AATTCATTGT 
CACGATTGCA GTATGGGTAC CCTTTGTATT CCGTTTACCC TCAATGCCAA TGAGCTCGAT
CAACTCGACG ATATTATTGA GCGTAAAAAG CCTATTCAAA AAGGTGAGCA GATTTTTAAA
TCAGGCGATC CGTTAAAATC TTTGTTCGCC ATCCGCTCTG GCACAGTCAA AAGTTACACT
ATCACTGAAC AAGGCGATGA ACAGATCACC GGCTTTCACT TAGCGGGCGA TGTGATTGGC
TTTGATGGCA TTCATGCTCA ATCCCATCAA AGTTTTGCCC AGGCCTTAGA AACCTCCATG
GTGTGTGAAA TTCCCTTCAA TATTCTCGAC GAACTCTCGG GCACAATGCC CAAGCTACGT
CAACAAATCA TGCGCTTAAT GAGTAATGAA ATCATGAGCG ACCAAGAGAT GATTTTATTG
CTGAGTAAGA AAAATGCCGA AGAGCGCCTT GCTGCCTTTA TCAGTAATCT TGCTAACCGC
TTTGGCAGTC GTGGTTTTTC TCCGAAAGAA TTCCGTTTAA CCATGACCCG TGGTGACATT
GGTAACTACC TTGGTTTAAC TGTTGAAACC ATCAGTCGCT TGTTAGGCCG CTTCCAGAAG
TCAGGTTTGA TTGAAGTAAA AGGCAAATAC ATCACCATAG TTGACCATCA TGAACTGAAT
CTCTTGGCGG GTAACGCCAG GATCGCCAGA TAA
 
Protein sequence
MTIEQNKNRR PAASGCTIHC HDCSMGTLCI PFTLNANELD QLDDIIERKK PIQKGEQIFK 
SGDPLKSLFA IRSGTVKSYT ITEQGDEQIT GFHLAGDVIG FDGIHAQSHQ SFAQALETSM
VCEIPFNILD ELSGTMPKLR QQIMRLMSNE IMSDQEMILL LSKKNAEERL AAFISNLANR
FGSRGFSPKE FRLTMTRGDI GNYLGLTVET ISRLLGRFQK SGLIEVKGKY ITIVDHHELN
LLAGNARIAR