Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1948 |
Symbol | |
ID | 4258373 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 2299737 |
End bp | 2300714 |
Gene Length | 978 bp |
Protein Length | 325 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638122611 |
Product | transketolase, central region |
Protein accession | YP_737994 |
Protein GI | 114047444 |
COG category | [C] Energy production and conversion |
COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.858675 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000302013 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | GTGGCAGAAA TGAATATGTT ACAGGCCGTC AATGAGGCCT TGTCTATCGC CATGCAATCT GACGAGCGCA TGGTGGTATT TGGTGAAGAC GTTGGCCACT TTGGCGGTGT GTTTCGCGCA ACCTCAGGTT TACAGGAAAA GTTTGGTCGT AGCCGCTGCT TTAACACGCC GCTGACTGAA CAAGGCATCG CGGGTTTTGC CAACGGTTTA GCCTCTAATG GCATGACCGC CGTAGCGGAA ATCCAGTTCG CCGATTACAT CTTTCCAGCG TTCGATCAAA TAGTGAACGA GTCTGCTAAA TTCCGTTACC GCAGTGGCAA TGAATTTAAT GTGGGAAGTC TAGTGTTCCG TACACCTTAT GGTGGCGGTA TTGCGGGCGG CCATTATCAT TCACAATCGC CAGAAGCTTA TTTTACCCAA ACCCCAGGCT TAAAAGTGGT TGTGCCACGT AATCCTGAGC AGGCTAAGGG CTTATTATTA GCCTCTATTC GCGATAAAAA CCCTGTGGTG TTCTTTGAGC CAAAGCGTTT ATATCGCGCA TCGGTTGGTG AAGTCCCTGC GGGCGATTAT GAAATCGAGT TGGGTAAAGC CGAAGTGGTG CGTGAAGGGA AAGATATCAC CTTAGTGGCC TGGGGCGCAC AGATGGAAAT CATCGAAAAA GCGGCCGACA TGGCGGCAAA AGAGGGGATT TCCTGCGAAA TTATCGACCT ACGTACACTC GCACCTTGGG ATGTGGATAC AGTTGCTGAT TCTGTGAAGA AGACCGGCCG CTTACTGATC AACCATGAAG CACCATTAAC GGGTGGTTTT GCCGGTGAAA TCGCGGCGAC GATTCAGCAG GAATGTTTCC TGTATTTAGA ATCACCCATC AGCCGTGTAT GTGGTCTAGA TACCCCATAT CCACTGGTCC ACGAAAAAGA ATATATGCCC GATGCGCTCA AAACCTTTGA AGCCATTAAG GCATCGGTGA ACTTCTAG
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Protein sequence | MAEMNMLQAV NEALSIAMQS DERMVVFGED VGHFGGVFRA TSGLQEKFGR SRCFNTPLTE QGIAGFANGL ASNGMTAVAE IQFADYIFPA FDQIVNESAK FRYRSGNEFN VGSLVFRTPY GGGIAGGHYH SQSPEAYFTQ TPGLKVVVPR NPEQAKGLLL ASIRDKNPVV FFEPKRLYRA SVGEVPAGDY EIELGKAEVV REGKDITLVA WGAQMEIIEK AADMAAKEGI SCEIIDLRTL APWDVDTVAD SVKKTGRLLI NHEAPLTGGF AGEIAATIQQ ECFLYLESPI SRVCGLDTPY PLVHEKEYMP DALKTFEAIK ASVNF
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