Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1912 |
Symbol | |
ID | 4258651 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2256909 |
End bp | 2258813 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638122567 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_737958 |
Protein GI | 114047408 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00115301 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGATGT CTAAATCATA TCCCATCTTT TTATTGCTGA TTTTTTTAGG GCTGTTTGGT TGGATTTATC ACAACGAAAA TAACCAGCTC CAGGTCCAGC AACAACAAGA GCTCAGTAAC TTCAAACAAT ACTTGGGTAA TTTTTCCCAG TGGCAAGGCA ATGGCGCCGA GCTCTATCAA ACTATTTCTG CCCATTACCC GCTGCAGTTT TTTCAATATA TTGATGATAC CGATGGACAG CTCAATTACA CCCAAGGTGA GCTCAATTCC CAAGGTTCGC ATCCACTCTC TGGATTATTT GCCTTAGATT TAGCTCATAC ACAAAAACTG GCCGCGGGTC GTTTGCAGGT AAAACTCAGT GCCGACCAAG CGATTGAGAC TGCTATCGGC AGCACTCAGC AACTCGGCTT AGTATTGATA CTCACCTACA TCATACTCTT GGTTGTGTTT GTATTGCTTA ACAACAAGTT AAGATCGGCT ATCCGTTATG CGGCTGAGTA TATTTCCCAT ATTCCAGAGA TGAATTTTTC TGCCATTGAA TCCTCCAAAC TCAATGGTGA AATGACGCCA GTGAGATTGG CACTCGAAGA CTGCCGCCTG CAGCTTAAAT CGCAAATGGA TACCCTCACC CAAGAAAACC AGAAACTGCA TAAGGTGGCT TATCAGGATC CGATCACCGG ATTTGGCAGT CGTCCGCGTT TTACCACTAA GTTGGAAAGC ATTAGTAACC GCAGCGTGCC TCAACTTGGG CTGCTGGCCA TGGTTAAAGC GACAGAGCTT TCCCATGTGA ACCAATTACA AGGTCGCTCC GCCGGTGATG ATTATCTAGC CAGCGTCGCC AATTGCATTC GTAAAGCCTG TTCAAAATAT CCCGATTCTG AAAGCTACCG CGTCTCCAGC GCCGATTTTG CGATCTTTTT ACCCGATTTA GTGTTAAAAG ACGGCCCTAA ATTTTTAGAA CAACTTAAAG TATTCCTCGA TGAATACCAG CAGATGACGA GAGCTGAATC TGTGGCGCAC ATTGGTTTAG TGCCTTACCA ACAGGGCACA GATCCCGTTA ACCTGCTCTC CTTGGCGGAC ACCGCCGTGA GCATAGCGCA AACCTTAGGC CCCAACAGTT TCCATATTCA AGAGAAACTC AATGGTGACG AGCAGTTTGG CGACGACCGT TGGAAAGTGG CAATCAACGA CTTAATTAGC CGCCAAGCGC TAAAATTTTT TCAACAACCC ATTCAACCTT GCCGCAATGA TGTCGAGGTT TACCGCGAGT TACTGGCACG CTTTTACAAC AGCGAAGGCA AGTTTTTACC CACCACCACG GTTATCGCCA TGGCCGAGCG CCACGGGATG AGCACCGAGT TAGATAAACT CGTGGTGATC AGCACATTAA GAATGCTTAA AGAAAATCCG ACCATTAGCG GTAACTTTGG CATCAATATC AGCGCTTTTT CGGCCCATCA AGAACTGTTT GTCGGCTGGT TGCGTGATGT TCTCGGCAAG CACAGGTATA TCGCCTCACG TTTAGTGTTT GAGATCAACG AGTCAGGTAT GCAAGCCAAT TTAGGTGCCA GCTATAAGTT TGTCCGTGAG GTTCACAGTG TTGGTTCGCG GGTCTCAATC GAGCGATTTG GGATGAGCTT TACTTCCTTC AAATTCTTCA GCGAAGTACG CCCAGACTAC ATTAAGCTCG ATGGCAGCTA CACCTCATCA ATCGATGAAG ACAGCAATAA TAAGTTCTTT GTGCGGATGA TGGTGGATGT GGCAAGACGT ATCGGCATTC GTGTTATCGC GACGAGTGTC GAACGTCAGG AGGAAAAACT GACCCTCGAA AAACTCCTCG TCGATGGGCT GCAGGGCTAT TATATTGCCC AGCCGCAAGC CATTACCTTA ACTGACCAAA TTTAA
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Protein sequence | MAMSKSYPIF LLLIFLGLFG WIYHNENNQL QVQQQQELSN FKQYLGNFSQ WQGNGAELYQ TISAHYPLQF FQYIDDTDGQ LNYTQGELNS QGSHPLSGLF ALDLAHTQKL AAGRLQVKLS ADQAIETAIG STQQLGLVLI LTYIILLVVF VLLNNKLRSA IRYAAEYISH IPEMNFSAIE SSKLNGEMTP VRLALEDCRL QLKSQMDTLT QENQKLHKVA YQDPITGFGS RPRFTTKLES ISNRSVPQLG LLAMVKATEL SHVNQLQGRS AGDDYLASVA NCIRKACSKY PDSESYRVSS ADFAIFLPDL VLKDGPKFLE QLKVFLDEYQ QMTRAESVAH IGLVPYQQGT DPVNLLSLAD TAVSIAQTLG PNSFHIQEKL NGDEQFGDDR WKVAINDLIS RQALKFFQQP IQPCRNDVEV YRELLARFYN SEGKFLPTTT VIAMAERHGM STELDKLVVI STLRMLKENP TISGNFGINI SAFSAHQELF VGWLRDVLGK HRYIASRLVF EINESGMQAN LGASYKFVRE VHSVGSRVSI ERFGMSFTSF KFFSEVRPDY IKLDGSYTSS IDEDSNNKFF VRMMVDVARR IGIRVIATSV ERQEEKLTLE KLLVDGLQGY YIAQPQAITL TDQI
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