| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1908 |
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| Symbol | rnfD |
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| ID | 4258647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 2252090 |
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| End bp | 2253139 |
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| Gene Length | 1050 bp |
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| Protein Length | 349 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 638122563 |
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| Product | electron transport complex protein RnfD |
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| Protein accession | YP_737954 |
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| Protein GI | 114047404 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTTA AAATAGCCTC ATCACCCCAT GTTACCCGTA ATTTGCATAC ATCAACGGTT
ATGCAAAGGG TCATTTTATG CTTGTTACCC GGCCTTGTGG TGCAATGCGC CTTTTTCGGC
TGGGGCACGC TTATTCAAGT GTTACTGGCG ATTATCGTTG CCCTAAGCTG TGAAGCCGCG
GTGATGAAAC TGCGTAACCG CAGCATCAAA GCAAGCTTAA GCGATAACAG CGCTATGCTG
ACGGCGATCT TAATCGGGGT TGCGATCCCG CCGCTGGCAC CTTGGTGGAT GATCGTTATG
GGCACAGTGT TTGCGATTGT TATCGTCAAA CACCTCTACG GTGGCCTAGG CCATAACCTG
TTCAACCCCG CGATGGCTGC CTATGTGTTA CTGCTGGTTT CCTTCCCCGT GCAGATGACC
AGTTGGATTG CACCAAGTAC AGTTGCGCTC AATACCCCAA GTGTGATCGA TAGTTTGCAA
TTGATCTTCA ATGTCGGCGC CCATGGTGGC ATGGAACAAT TCCGCCTCGG TATCGATGGG
ATCAGTATGG CGACACCACT CGATACCCTC AAAACCGATC TATCACTAGG GCTCACCACC
ACTGAGAGTA TGGCTAAAAG CATCTTCGAT GGCGGCACTG GCGTAGGTTG GTTTTGGGTC
AATTTGGCTT ATCTTGCTGG CGGTTTAGTG CTACTTAAAT TAAAAGCCAT CCGTTGGCAT
ATCAGCACCG GCGTATTGGC GGGATTATTT GTGGCATCGA GCATTGGCTT TTTACTGTCG
CCCGATACAC AGGCAAGCCC ACTGTTCCAT TTATTCTCGG GCGCGACCAT GCTCGCCGCC
TTCTTTATTG CAACCGATCC TGTCACCGCG GCGACCAGTC CGCGCGGCCG TTTGATTTTC
GGCGCATTAA TTGGCGTCTT GGTCTATGTC ATTCGTACCC AAGGTGGCTA CCCCGATGCC
TTCGCCTTTG CCGTGCTGCT CGCAAACCTG TGCGCGCCAT TTATTGACTA CTATGTGCGT
CCGCGTACCT ATGGCCATTC AGCGCCCTAG
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| Protein sequence | MAFKIASSPH VTRNLHTSTV MQRVILCLLP GLVVQCAFFG WGTLIQVLLA IIVALSCEAA
VMKLRNRSIK ASLSDNSAML TAILIGVAIP PLAPWWMIVM GTVFAIVIVK HLYGGLGHNL
FNPAMAAYVL LLVSFPVQMT SWIAPSTVAL NTPSVIDSLQ LIFNVGAHGG MEQFRLGIDG
ISMATPLDTL KTDLSLGLTT TESMAKSIFD GGTGVGWFWV NLAYLAGGLV LLKLKAIRWH
ISTGVLAGLF VASSIGFLLS PDTQASPLFH LFSGATMLAA FFIATDPVTA ATSPRGRLIF
GALIGVLVYV IRTQGGYPDA FAFAVLLANL CAPFIDYYVR PRTYGHSAP
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