Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1747 |
Symbol | |
ID | 4256274 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 2054221 |
End bp | 2054865 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 638122405 |
Product | putative solute/DNA competence effector |
Protein accession | YP_737797 |
Protein GI | 114047247 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3109] Activator of osmoprotectant transporter ProP |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.144322 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGAAT CAACAGATAA GTTGACCGAC ACCAACGCAA TTTTGGCGTA TTTGTATGAA ACATTTCCTT TGTGCTTTAT TGCTGAAGGT GAAACTAAGC CATTAAAAAT CGGATTGTTT CAAGATTTGG CTGAAAGGTT GGCTGATGAT TCTAAAGTCA GTAAAACTCA ACTGCGAGTT GCCTTAAGAC GCTACACCAG CAGCTGGCGC TACCTGAAAT CGGTAAAAGC CGGTGCACAG CGTGTGGATC TTGATGGTCA GCCATGCGGT GAGTTAGAGC AAGAGCATAT CGATCATGCT CAAGCGATGT TGAAAGAAAG CCAAGATAAA GCAAAAGCTA AGCGTGCAGC TCAAGCGCCA AAAGCGGCGC CTGCGGGTAA AGCGCCTGCG AAGAAAGCCC CTAAGAAAGT TGCCGTGCCA GCACGCAAGA CTGAGCGCCC AGCAAAAGCA GCACCTAAGG CAGAGCCTGC TGTTAACTTA GTTCAAGCGC AATTGACCGA TTTAGCGAAG AAGCAACGTG TCAATGTTAA GTTAGGGATG ACGCCAGTAG CCGGCGTGAT CACCGACATT AACAAAGAGG ACATTCATGT TCAGCTAGAT AGCGGCTTAA CGGTAAAAGT GAAAGCGGAA CATATCCTGC TGTAA
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Protein sequence | MMESTDKLTD TNAILAYLYE TFPLCFIAEG ETKPLKIGLF QDLAERLADD SKVSKTQLRV ALRRYTSSWR YLKSVKAGAQ RVDLDGQPCG ELEQEHIDHA QAMLKESQDK AKAKRAAQAP KAAPAGKAPA KKAPKKVAVP ARKTERPAKA APKAEPAVNL VQAQLTDLAK KQRVNVKLGM TPVAGVITDI NKEDIHVQLD SGLTVKVKAE HILL
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