| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1704 |
|---|
| Symbol | |
|---|
| ID | 4255263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 2010834 |
|---|
| End bp | 2011910 |
|---|
| Gene Length | 1077 bp |
|---|
| Protein Length | 358 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638122362 |
|---|
| Product | RND family efflux transporter MFP subunit |
|---|
| Protein accession | YP_737754 |
|---|
| Protein GI | 114047204 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.271919 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAGT CAAAAATTGC TAAGTTCGCC CTACCCGTGC TGTTAGTGTC AATGTTAGCG
GCATGCGGCG AAGAGGAAGT GGCTAAAAAA GAAGAACAAT ATGCCATCCC CGTCGAAACC
ACTACCGTAC TGCAGGGTAA TGTGTCTTCG TTTTATAGCA CTACGGCGAC CCTCGAAGCT
CCGCAGGAAG CCAACGTCGT TAGCCGCATT GCCGGCCTTA TCGAAGCCAT TAATGTCGAA
GAAGGTGACC GGGTACAAAA AGGCCAAATC CTTGCGGTTA TCGATGCTAA ACGTCAGCAA
TACGATCTCG ACCGCTCCGA AGCCGAAGTG AAAATCATCG AGCAAGAGTT AAACCGCTTA
AAGAAAATGA GCAACAAAGA GTTTATCAGT GCCGACTCGA TGGCCAAGCT TGAGTACAAC
CTACAGGCCG CTATCGCCAA ACGCGATCTT GCCGAACTAC AAGTCAAAGA AAGTCATGTG
GTCTCCCCCA TCAATGGCAT TATCGCTAAG CGTTATGTGA AGGCCGGTAA TATGGCGAAG
GAGTTTGGTG ATCTGTTTTA TATCGTCAAT CAAGACGAGC TGCACGGGAT TGTGCATTTA
CCCGAGCAGC AATTAACCAG CCTGCGTTTA GGCCAAGAAG CCCAAGTCTT TAGTAATCAA
CAGAGCAAAA ACGCTATCCA CGCGAAAGTA TTGCGGATAA GCCCAGTGGT CGACCCACAG
AGCGGCACCT TTAAAGTGAC GTTAGCCGTA CCGAATCAGG ATGCCCATTT AAAGGCCGGT
ATGTTCACAA GGGTCGAATT GAAGTATGAC ACCCATGAAA ATGTAATCAC CGTGCCCTAC
AGCGCCCTGA TCAATCAAGA CAACAAGCAA GCCCTGTATG TAATTGATGG CACGAGCGCA
GACCATCGCG CCAATCGCCG TGAAGTCGAA ATTGGTTACC GTGAAGGCGA TGCGGTGGAA
GTGGTCTCCG GTCTAAAACC TGGCGAGCAA GTCGTGACAC GTGGCCAGCA AAATTTGAAA
GACCAATCCT TAGTTGAAGT CATTACCCCA CTCGATTTGG CCTCAGCGAA GAACTGA
|
|---|
| Protein sequence | MEKSKIAKFA LPVLLVSMLA ACGEEEVAKK EEQYAIPVET TTVLQGNVSS FYSTTATLEA
PQEANVVSRI AGLIEAINVE EGDRVQKGQI LAVIDAKRQQ YDLDRSEAEV KIIEQELNRL
KKMSNKEFIS ADSMAKLEYN LQAAIAKRDL AELQVKESHV VSPINGIIAK RYVKAGNMAK
EFGDLFYIVN QDELHGIVHL PEQQLTSLRL GQEAQVFSNQ QSKNAIHAKV LRISPVVDPQ
SGTFKVTLAV PNQDAHLKAG MFTRVELKYD THENVITVPY SALINQDNKQ ALYVIDGTSA
DHRANRREVE IGYREGDAVE VVSGLKPGEQ VVTRGQQNLK DQSLVEVITP LDLASAKN
|
|---|
| |