| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1601 |
|---|
| Symbol | |
|---|
| ID | 4258699 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1880699 |
|---|
| End bp | 1883545 |
|---|
| Gene Length | 2847 bp |
|---|
| Protein Length | 948 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638122254 |
|---|
| Product | PKD domain-containing protein |
|---|
| Protein accession | YP_737656 |
|---|
| Protein GI | 114047106 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2374] Predicted extracellular nuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.156806 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTAATA ACAAAACACT GTTGGCGTTA GCCATCAGTA GCGTGTGTGG GTTTGCCCAT
GCTGCCGATA ATCTGATTAT TTCTGAATAT GTTGAAGGCA GTAGCAATAA CAAAGCCATT
GAGCTGTACA ACCCAACTGC CAACACTCTC GATTTAAGCC AGTATCAATT GCGCTTCTAT
TTTAATGGCA GCACCAATGT GGGCACGACT ATTGCCCTAA ACGGTACCTT AGCCGCAGGT
GCGACTTATG TGGTTGCTGA TAACGACGCA TCGGCGGATA TTCTGGCGGT GACGAATCAA
CAAAGCAGCG CGAGTTTTTT CAATGGTGAC GATGCCATTG TGCTGACCTA TCAAGACCAA
GTGATTGATA GCTTAGGCCA AGTAGGTGTC GATCCCGGCA CTGAGTGGGG CAGTGGTGAT
TTATCGACGC AGGACAATAC CCTGCGCCGC AATCCCGATC AGCTAATCGC CGATCCTATT
ATTGATGATG CTGTCACCTT TAATACATGG TTAGGTTTTG CCAAAGACGA TATCTCGGAT
CTGGGTAAGT TCAGCGCGGG CACACCCACC GATCCTGTAG AGCCGCCACC GAGTTCATTA
GCCTGTGGCG AAGCCTCAAC GCCTATCCAT GCCCTACAAG GTTCGACCAA TGTCAGTCCG
TTAAACGGAC AAATCTTAGT GGTTGAAGCC ATAGTGGTGA GTAACCAAGA AGCTGGCCTA
AAGGGCATCT TCGTGCAAAT GGCCGACAAC GAAGCCGATA ACGATCCTCA AACTTCGGAA
GGGGTGTTTG TTTATACCGG TAATGCGCCT ACGGGTTACG TGGCGGGCGA CCGTGTACGC
TTAAAGGCTA AAGTCACTGA ATATCAAGGC TTAACGGAAC TGACTACCGT TGCCGACCAT
AAACTGTGTG CCGCCGGACA ACCCCTACCC ACAGCCGCTG TGGTGACGTT ACCAGTGAAT
TCGAGCGATG ACTTTGAACC ATTTGAAGGC ATGCGCGTAC GCTTTAGCCA AGATCTGGTG
GTGAACGAAG TCTACAACTT AGGCCGCTAT GGTGAAATTT CACTCGGTAG TAGCCGTCAC
TTTATTGGGA CGCAAGTCGC TGCGCCAGGT GCCGATGCTT TAGCCGTCAC GGCGGCCAAT
CTTAAAGACA GTATTTTACT CGACGATGGC CTAACGGCGC AGAACCCAGA TCCTGTGATT
TTCCCAGCGC CAGGTTTAAG CGCGTCGAAC ACTGTGCGTG TGGGTGATAA AGCCACGAGC
CTGACGGGCG TCATGCACAA TGGCTTTAAT CTTTATCGCA TTATGCCGAC TGCGCAAGTT
AATTTTGTGG CGGAAAATCC TCGTCCACAA TCGCCAGTAC TAGCCGAAGG TGGCAACCTG
AAGGTCGCAA GCTTTAACGT ACTGAACTAC TTTAATGGCG ATGGACAGGG CGGTGGTTTC
CCGACTGCGC GCGGTGCCAA TACCCTGAGT GAGTTTGAGC GTCAAAAAGC GAAGATTGTC
AGTGCTATGG TGGGGATCAG TGCCGATGTG TTTGGTCTGA TGGAAATCGA GAACGATGGC
TTTGGCGCTA ACTCGGCGAT TGCCGATCTC GTGGCGGGCC TCAATGCCGC TGTAGGTGAA
AATCGCTATG ACTATGTTAT TCCAAAGGTC AATGGCAGCA ACTTAAGCGC GATCGGTACG
GATGCGATTA CCGTCGGTTT AATTTATCGC AGTGACAAAG TGAGCCCTCA GGGTGATGCG
CGTATTTTAT CGAGCGCTAA CTCTCCCTTA GATGACGCCG GGCAGCCGCT GTTTGACGAC
AGCAAAAACC GCCCTATGTT GACTCAAGCC TTCGCGCTAA ACGGCAGTGA GGAAAGCGTG
GTCGTTGCGG TTAATCACTT GAAATCTAAG GGCAGTGAGT GTGCAGGCGA TCCAGATATG
AACGATGGCC AAGGTAACTG CAATATTACC CGTACCCGCG CAGCAACGGC GGCGGGGCAG
TGGATTGCCG CGCAGTATCC AGAGCAAGGC GTACTGCTAA TTGGCGACTT AAACTCCTAC
GCCAAGGAAG ATCCGCTAAG CGCATTGGCT AACGCTGGCT TTAGCGAGTT GTTTGCAAAA
CTCGAAAAAG CCAACCCTTA TTCCTATGTA TTCTCGGGTG AATCTGGGCA GTTAGACCAT
GCGCTGGCTA ATGCCGCGTT AGTGGATAAA GTCCTAGATG TGACCGAGTG GCATATCAAT
ACCGACGAGC CGCGCGTGTT AGATTACAAC GAAGAGTTCA AGACGGCTGC GCAGGTGCAA
GACCTGTACG CCAGTGATGC TTATCGTTCA TCAGATCATG ATCCTGTGGT GATTTCTCTG
TTGCTCGAAG CGGAAAAAGT GGCTCCTGAA GCCAGCTTCA CTCAGGTTGT GAATGGTGCG
AGTGTGCAAT TTACCTCTAC TTCAACAGAT AGCGACGGTC AAATCGTCTC TACTCAGTGG
GACTTTGGTG ACAACACTCA AGCCATGGGA GAGGCCGTAT CCCACATCTA TGCGCAAACT
GGTGATTATC TAGTGACGTT AACTGTGACC GATAATGACG GCTTAAGCCA TAGCAGCTCA
CAAATGGTGT CTGTCGTGGT TGAGAACGTG AAAAAGCCAC CCGTTGCGCA AATTCAGCAC
ATCAATTTAT GGCTAGTCGA TATGTTTATT TCGACCAGCT ATGACACAGA CGGTGTGATC
AAGCAGCATA AGTGGAAGTT TGATAACGGT AGCCGTGCAA GTGGTCCTGT GGTGTTTCGC
CAAGCTCGCC GCGGACTCCA TACGGTCGAG TTAACCGTAA AAGACAATGA TAAATTAACG
GATACCACCT CACTGACATT CCGTTAA
|
|---|
| Protein sequence | MFNNKTLLAL AISSVCGFAH AADNLIISEY VEGSSNNKAI ELYNPTANTL DLSQYQLRFY
FNGSTNVGTT IALNGTLAAG ATYVVADNDA SADILAVTNQ QSSASFFNGD DAIVLTYQDQ
VIDSLGQVGV DPGTEWGSGD LSTQDNTLRR NPDQLIADPI IDDAVTFNTW LGFAKDDISD
LGKFSAGTPT DPVEPPPSSL ACGEASTPIH ALQGSTNVSP LNGQILVVEA IVVSNQEAGL
KGIFVQMADN EADNDPQTSE GVFVYTGNAP TGYVAGDRVR LKAKVTEYQG LTELTTVADH
KLCAAGQPLP TAAVVTLPVN SSDDFEPFEG MRVRFSQDLV VNEVYNLGRY GEISLGSSRH
FIGTQVAAPG ADALAVTAAN LKDSILLDDG LTAQNPDPVI FPAPGLSASN TVRVGDKATS
LTGVMHNGFN LYRIMPTAQV NFVAENPRPQ SPVLAEGGNL KVASFNVLNY FNGDGQGGGF
PTARGANTLS EFERQKAKIV SAMVGISADV FGLMEIENDG FGANSAIADL VAGLNAAVGE
NRYDYVIPKV NGSNLSAIGT DAITVGLIYR SDKVSPQGDA RILSSANSPL DDAGQPLFDD
SKNRPMLTQA FALNGSEESV VVAVNHLKSK GSECAGDPDM NDGQGNCNIT RTRAATAAGQ
WIAAQYPEQG VLLIGDLNSY AKEDPLSALA NAGFSELFAK LEKANPYSYV FSGESGQLDH
ALANAALVDK VLDVTEWHIN TDEPRVLDYN EEFKTAAQVQ DLYASDAYRS SDHDPVVISL
LLEAEKVAPE ASFTQVVNGA SVQFTSTSTD SDGQIVSTQW DFGDNTQAMG EAVSHIYAQT
GDYLVTLTVT DNDGLSHSSS QMVSVVVENV KKPPVAQIQH INLWLVDMFI STSYDTDGVI
KQHKWKFDNG SRASGPVVFR QARRGLHTVE LTVKDNDKLT DTTSLTFR
|
|---|
| |