| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1490 |
|---|
| Symbol | |
|---|
| ID | 4257767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1735143 |
|---|
| End bp | 1738517 |
|---|
| Gene Length | 3375 bp |
|---|
| Protein Length | 1124 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638122139 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_737546 |
|---|
| Protein GI | 114046996 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3170] Tfp pilus assembly protein FimV |
|---|
| TIGRFAM ID | [TIGR03504] FimV C-terminal domain
[TIGR03505] FimV N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00398816 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTC GCACTTCGTA TCTTGTGGGC CTGATGGCCA CCGTTTTAGC TGTTTCTTCC
ACGACCTCTT TTATTGATCC TGCGATAGCT GCTGATACTC CCAAAATAAA ACCTTTAAAA
ATCATGGGTC CAGATGGACA GATCCGTCAG GTCAATCATC AATATGGACC AACGACCTCT
AAGGACACTT TCTGGAGTAT TGCGCAAAAA GTCCGTCCCG ACGCCAGTGT CAGTGTTTAT
CAGGTGATGG CCGCAGTATT TGATGCAAAC CCCCATGCGT TTAACTCCGA CAGTTACAAC
AGCCTCGAAC GTGGCATGAT TTTGCTGATC CCTTCGAAAG AAGTGATGCT CGCCATCCCC
AATAGTTTGG CCATTGCCCG CGCCGAGCGT AGCGATAAGC AGGCCCGTTC TGGTGCTAAA
GCCACGCCTA AGGCAGAAAC CAAACCTGCG ACTAAGCCAG CTGCACCGAC TCAGACCGTC
GCACAGCCTA AACCTAAGGT GGAGACGCCA CCTAAGGCCG AGGTGAAGCC CGAAGCGGCG
AAAGTGACCA ATACCGAAGT GGCTGCGACG CCAACCGCGC CTAAGATGGT GAGCTCGGAT
ATCAATGCAC GCCTCGAAGC GGCGGAGAGC AAGAATTTAT CCCTGACCGA TGAGTTAGCC
AGAGCGCAAG ATCAACTCGC GGTGAGAAAT ACCGATGTTG AGACACTCAA AGCTAAGGTT
GAAGAATTAA ATCAACAGAT TGCGGTATTA GAAGAAACCC TACAGGCCAG CAAGAAGCAA
AACCTTGCAC TTAAAGCCGA GGTTGAGGCC GCACAAACGC CAGAGACCGC GACCACAGAC
GAGCCTGCCA TGCCAGCAGA GCCAGATGAT CTGTGGCGTA ACCTGATGAG TAATCCACTG
CTCCTCGTTG CAGCGGCGGT GATCCCAGCC TTGTTGCTAC TGGTCCTCGT TTTCTGGCTA
TTACGCCGTA AACGTAATAA AGAACGTCGT GAGCTTGAAT CACAGCAGGC GGCTATGATG
GCCGCGGGTG CGGCTGGCGT GGCGAGTGCG TCCGTACTGG CGATGGACGA TGACGACCTC
GGCGATATGG CGGTGCATTT AGATACTGAC CATGCCGATT CGATCGACAG TTTACTCGAT
GTCGGCAGTG TCGACCTGCA ACCCGAGCAG GACATGACAG ATAGCCATGA ACAGATGGAC
ATGGCATCCG AAATGTTTAT TGACCCAGGT GTCAGCACTG AGCCAGAACC ACAATTTGAA
GAGGATGAAG GCCAGTCTCT GGACGATCTC TGGGCTGAGG CCATGGGTGA CCAAGAGGAA
GCCGAAGCCT TTGCCGAAGA AAAAGCTCCA TCCGGCAATA TTATTGAGGA AGAAGACCTC
GATGCACTGC TGGCCGGATT GGACGCTGAT GAAGAAGATA CCCCACAGGA AGCTCAAGCT
TCCGCAGCGG GGCTTGACGA TCTTGACGAA TTAGCCGGTT TTGATTTACC TGCAGAACCT
GCGCCAGATA CAGAGGATGA AGATTTAGCC GCAGCCATTG CTGCCGAACT AGATTCTGGA
CTAGGCGCTG ACTTAGCCAC AGAGCTGGAC GCTGAGCTTG AAAACGATGC AGCGCCAGCT
GACGATGATA TTGATGCGTT ACTCGCTGGC TTTAATCAGC CAGAGGTGAA AGAGACTGCC
GAAGTTGTCG ATGAGGACCT CGATGCCTTA TTGGCCGATT ATGACAAGGC CCCAGCAGAA
GCCACAGATG ATCTCGGCGA TGAAATTGCC GCCGAATTGG ATGATGACTT AGCCGAGTTG
GGGGTTGCGC AAACCGATGA TATCGATGCC TTGCTGGCCG ATTTTGATAA ACCCGCCGCG
CCAGAACCCG ATTTAAGCGA TGAAATTGCT GCCGAGCTTG ATGCCGACTT AACTGACATT
GACGTGAGCG GCTCAGATGA TATCGATGCG TTACTGGCTG GCTTAGATGC TCCCGCGCAG
CCCGATCCTG AAGTCGCCGC GGCGATTGCT GCCGAGTTGG ATGATGAACT CGCTCCTGAA
TTGCCAACAA GCGATGAAGA TCTTGACCAG TTACTAGCAG GCTTTAACAC GCAAGAAGCG
TTAGTCGAAG AAGCCGCAAT TGAAGATGCT GTGGCTGAGG ACGCGCCTCA AGATGAAGTC
GCCCTTGAGC GCGATGAAAT CGCCGCCGAA TTCGAAGCCG CATTACCTGA AGACTTGTCG
ACGTCGGAGG ATGACCTCGA TTCACTCTTA GCCGAGTTCG ATGTACCCGA ACAAGCCGAG
GCGGATGCCG ATGACTTTAA CTTCGACTTA GAAACCACTC ATGTCGAGCC AGAAGAAAAA
GCCGATGAAG ACGATTTACT CAAGGGCATT GGTGCTGCCC ATGCTATTGA TGGCACAGAT
GATACCTTCG AGCTGACCGA AGAGATTGCA GATAACCAAG ACAACGTCGA TGACCTGGCG
ACTGAGCCTA AATCCACGGG GTTTGATGCT GATACTGACG ATATGGCGCT TGCTGGTGCA
GCTGTTGCCG CGGCAGCCGC CGCCAGTGCG AAGGAAAAAG AGTCATCATT CTTCAATGAC
TTAAAGGCAA ATAAGAGTAA AGATCCCCAT GTTCTCGATT GGGATACCGA ACTGAATTTT
GCACCTACGC CTGAGGCTAA AACGCCGATC AAGCCCGAAA CCGATTTGCC TTTAGATCCT
GTGCCAGTGC AAGGTACGGC AAAGCGTCAA CCGCTTGAGT TTGCGCCTGA TGCAACCGAT
GCAAAGCCAG AGTCAACAGC GAAAAATACC GCCGAGAACA CTGAGTTTAA CCTCGATGAT
GAGCTGGATT TAGGCCACGA GTTTGATTTA CAAGACGATA ATGATGACGT CGATTTAAGC
GATGACAGCG TGCTTGCAGC CTTTACTGCG GGCGCTGAGC TTGCTGATGA AGAGGTATTA
ACCCCAGAGG ACAGCTTTGC CCTCGATGAC GAGCATACGC TCACCGTCGA CGAGGCCCTA
GCGGCCCTCG ATGCGCAGGA GTCGCGCAAG ACGAAGAAGT TTGTCCCAGA GCATGATTTA
ACCAACTTCC AAAACGAGCA TGGCTATATC GATATCGAAA AACTGCTTAA TGATGCCGAG
CAGGATAGCG CTGAGACAGA TCTCTATCCC GAAATGGATG TTGAGATGAG TGATGTGGGC
GCCCTGATTG GCGATGCCGC CATGATCGAC GTGGACGATG AGGAAAACTC GGTCAATGCC
AAGCTCGATT TAGCCCGTGC CTATATCGAA ATCGATGACA GCGACAGTGC CAAAGCATTG
CTACGGGAAG TTCAAATCGA CGGTAACGAG CGTCAGCAAG AAGAAGCTGC CCGCTTACTT
AAAGAGATGG GTTAA
|
|---|
| Protein sequence | MKFRTSYLVG LMATVLAVSS TTSFIDPAIA ADTPKIKPLK IMGPDGQIRQ VNHQYGPTTS
KDTFWSIAQK VRPDASVSVY QVMAAVFDAN PHAFNSDSYN SLERGMILLI PSKEVMLAIP
NSLAIARAER SDKQARSGAK ATPKAETKPA TKPAAPTQTV AQPKPKVETP PKAEVKPEAA
KVTNTEVAAT PTAPKMVSSD INARLEAAES KNLSLTDELA RAQDQLAVRN TDVETLKAKV
EELNQQIAVL EETLQASKKQ NLALKAEVEA AQTPETATTD EPAMPAEPDD LWRNLMSNPL
LLVAAAVIPA LLLLVLVFWL LRRKRNKERR ELESQQAAMM AAGAAGVASA SVLAMDDDDL
GDMAVHLDTD HADSIDSLLD VGSVDLQPEQ DMTDSHEQMD MASEMFIDPG VSTEPEPQFE
EDEGQSLDDL WAEAMGDQEE AEAFAEEKAP SGNIIEEEDL DALLAGLDAD EEDTPQEAQA
SAAGLDDLDE LAGFDLPAEP APDTEDEDLA AAIAAELDSG LGADLATELD AELENDAAPA
DDDIDALLAG FNQPEVKETA EVVDEDLDAL LADYDKAPAE ATDDLGDEIA AELDDDLAEL
GVAQTDDIDA LLADFDKPAA PEPDLSDEIA AELDADLTDI DVSGSDDIDA LLAGLDAPAQ
PDPEVAAAIA AELDDELAPE LPTSDEDLDQ LLAGFNTQEA LVEEAAIEDA VAEDAPQDEV
ALERDEIAAE FEAALPEDLS TSEDDLDSLL AEFDVPEQAE ADADDFNFDL ETTHVEPEEK
ADEDDLLKGI GAAHAIDGTD DTFELTEEIA DNQDNVDDLA TEPKSTGFDA DTDDMALAGA
AVAAAAAASA KEKESSFFND LKANKSKDPH VLDWDTELNF APTPEAKTPI KPETDLPLDP
VPVQGTAKRQ PLEFAPDATD AKPESTAKNT AENTEFNLDD ELDLGHEFDL QDDNDDVDLS
DDSVLAAFTA GAELADEEVL TPEDSFALDD EHTLTVDEAL AALDAQESRK TKKFVPEHDL
TNFQNEHGYI DIEKLLNDAE QDSAETDLYP EMDVEMSDVG ALIGDAAMID VDDEENSVNA
KLDLARAYIE IDDSDSAKAL LREVQIDGNE RQQEEAARLL KEMG
|
|---|
| |