| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1486 |
|---|
| Symbol | |
|---|
| ID | 4257763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 1729202 |
|---|
| End bp | 1731142 |
|---|
| Gene Length | 1941 bp |
|---|
| Protein Length | 646 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638122135 |
|---|
| Product | FAD dependent oxidoreductase |
|---|
| Protein accession | YP_737542 |
|---|
| Protein GI | 114046992 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
|---|
| TIGRFAM ID | [TIGR03197] tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.193166 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGCAAT GGGGATTGGG CGATGGACTC GAGCTGCTCT CTCTACTACA ACACTGGCAA
ACGCAGACTC AGACTCAGAC TCAACCTCAG GGCAACACAC GACTGTTAGT CAAAGTGTTT
GAGCCTAATC CCATTAACGA TTACGAACTT AAATTACTTT GGGATCAATC GCAAAGCTTA
ATTTCCAAGT CTCATTTACA ACCGATTGCC AATGCCATCC TTAAGGCAAA ACCTGCGCGC
ATTATAGGGT GCCAGAGATT AATCTTTGAT GACGGCCGTA TCACGGTCGA TTTGCATTTT
GGCGATCTAC ACTCGGCACT CAGTCAACTG CCCCACAGCC CTGCTCATCT TATCCAGCAA
TGGCTGGTTT TACCGCATTT GGCGGCGCAG CTAAATGGCA AGCAAGTCTG GCAAATGGCC
CGTTTGAGCA CCGATGATGC CCAGCTGATT GGGGTTAATT TGGCAGAAAC CGTGCGGCAA
CTTGCCCACC AGAGTGGCTT TAGCACGCTT AACGTCAGCC AAGATACTTC GAATGGTGAT
GCAAGTGATG CACTGCAAAG CCAGATTATA ACCGATGAGA TTTTGCTCCA TGAGCGCAAA
CTGCTACGCC AGCAAGCCGA TACCGCTCAG GCATTTACCC CAAAACCTGC AGCGCTCGTG
GCTAAAGATC ACCCTGTAGC CATCGTCGGT GGTGGACTGG CATCGGCGAA CCTAATGCTA
TCCCTCGCCG AACGAGGCCA AAGTAGCACA TTGTTTTGTA AGGATAATGA GTTAGGTCAA
GGCGCATCCG GCAATCGCCA AGGGGCAATT TACCCCCTGC TCACGCCTGA AAATGATGAG
CTGAGTCGTT TTTTCCAACA GGCATTTTTG TTCAGCCGCC GCCGCATCGA GGCGCTGAGC
CATGCGTCGA TGATGGAGAC AGAAACCGCC AAGAATGTTA CCGCGATTTC CCATGACTTT
TGTGGGGTAC TGCAAACGGG TCATGATGAG CGCAGCCAAC AACGGTTGGA TAAAATCATC
CAAAGTCAGG ACTGGCCGGC GGAAATCGCC TACGCCGTTG ATGCGAATGA AGCCAACGAG
ATAGCTCAAA TAGGTATTGA TAAGGCTGGA TTTTTTTATC CCCTCGGAGG CTGGGTATGC
CCATTTGAAT ACGCCAAGGC CGCGGTGGAT AAGGCCTCGC AACTTGCCAA TGTGCAGTGC
CATTTCAATA CCGAGATAAC CGAAATCGAG TGTGATGCAA ACGCTTGGTA TCTCCACAGT
CAAGGCCAGC GTTTTGGACC ATTCCGCCAA CTCGTTCTCG CCAATGGCGC ACAGCTCACC
CAATTTTCGG CCTGTGAGCG GTTACAGATA AGTCCGTTTC GCGGCCAAGT GAGCCACGTC
CCCGCCCAAT TTAAGCTGAG CCAATTGGCG ACAGTGTTAT GCGCGAACGG TTACCTCACG
CCAAGTCATC AAGGCTTGCA TTGCCTCGGC GCCAGTTATG TCAAAGCGGC GGAGCACTTC
GATTTTTGCC CGCAGGAGCA ACGGGAAAAC CTCGGAAAAA TGCAAGAAAG CTACCCCAAC
CAAGCCTGGG TTGACGATAT CGACATCAGC GGCAATAGCG CCCGTGTCGG CGTGCGGATG
GTGACGCGGG ATCATTTCCC CATGATGGGC TGTGCGCCCG ATGTGGCTGA AATATTGGCG
CGCTATGAAC TGCATCAACT CAATCAGCAG CAAGCCGAAC AAAGCAAGCA TTATTGGCAA
ACGACCCCGG CTCCGATCCT CGATGGCCTT TATATCTTGG GTGGCTTAGG GTCGCGGGGA
TTAAGCTCTG GCCCCTTAGC GGCCGAATGT TTGGCGGCAC AATTAACCGG TGAGCCGCTG
CCACTGGATT GGCCCACCTT AAATAAACTC AACCCCAATC GGATGTGGCT ACGCAAATTA
CTAAAGGGTA AAGCGCTTTA G
|
|---|
| Protein sequence | MGQWGLGDGL ELLSLLQHWQ TQTQTQTQPQ GNTRLLVKVF EPNPINDYEL KLLWDQSQSL
ISKSHLQPIA NAILKAKPAR IIGCQRLIFD DGRITVDLHF GDLHSALSQL PHSPAHLIQQ
WLVLPHLAAQ LNGKQVWQMA RLSTDDAQLI GVNLAETVRQ LAHQSGFSTL NVSQDTSNGD
ASDALQSQII TDEILLHERK LLRQQADTAQ AFTPKPAALV AKDHPVAIVG GGLASANLML
SLAERGQSST LFCKDNELGQ GASGNRQGAI YPLLTPENDE LSRFFQQAFL FSRRRIEALS
HASMMETETA KNVTAISHDF CGVLQTGHDE RSQQRLDKII QSQDWPAEIA YAVDANEANE
IAQIGIDKAG FFYPLGGWVC PFEYAKAAVD KASQLANVQC HFNTEITEIE CDANAWYLHS
QGQRFGPFRQ LVLANGAQLT QFSACERLQI SPFRGQVSHV PAQFKLSQLA TVLCANGYLT
PSHQGLHCLG ASYVKAAEHF DFCPQEQREN LGKMQESYPN QAWVDDIDIS GNSARVGVRM
VTRDHFPMMG CAPDVAEILA RYELHQLNQQ QAEQSKHYWQ TTPAPILDGL YILGGLGSRG
LSSGPLAAEC LAAQLTGEPL PLDWPTLNKL NPNRMWLRKL LKGKAL
|
|---|
| |