Gene Shewmr7_1476 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1476 
Symbol 
ID4255638 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp1714777 
End bp1719069 
Gene Length4293 bp 
Protein Length1430 aa 
Translation table11 
GC content37% 
IMG OID638122125 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_737532 
Protein GI114046982 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.65929 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.14467 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCATCCT CGGACAATAC TAAGAACAAC ACTATGCCGA AAATACTCTT AAAAATCGTC 
TTAATCGCTT TTTTTGGCAT TCATGCGTTA GAAGACGTAA ACGCATCTCC ATTTTCAAAT
AAATCACCTA TTATTCTCCA GTCACAATCG TTTGGTGTAC CAGAAGGGCT TTCCCAAAGT
ACAGTTACAT CGATAGTTCA GGACCATGAT GGCTATCTAT GGATTGGGAC ATTTAATGGA
CTTAACCGCT TTGATGGAAA ACACTTCAGA CATTTCTATT CAAATGATCC TAGAACAGGT
CTTCCTAGTT CTTTTATTAG AAGCTTACTC GTTGATGCTC AAGGTCTATT ATATGTTGGA
ACAGACAACG GCTTAGTTGT TTACGATAAA CTTAAAGACT CATTCTCTCC TTATAGTATA
TCAGCAAAAA ACGCCCCTAT TTGGAGCCTC AACTCATCTA CTAATAGCTT AATCGTTGGC
ACGAATAATT CAATAATCGA TATAAGTAAC AAAGAAAAAA CATACGAACT CTTAAGTAAA
GGACTAGGTG AAATAAAAAA GGTCATCAAA GTAAATGATA CTTACTACAT AAGAGATTAT
GCAGGGAAAT TATTTTCTTT GACAAATGAT GAATTAAAAG AAGTAGCAAA TCATACTATA
GATTTCGATG AAATAAAACA AAGTGAAGTG ATAGTATCAT TCAGCAATGG ATTATATGAG
TATAATGAAA ATAAATCACT AAAGATAACT GAAGAATCAT TTTCTCAATT CGCAAAGTAC
GAAAGTACAG TTTACGGTTT TAATGACGGC AAAATAATTA ATGTTTCTAA TGGAACCACT
ATCGGTTCTA TTCCTTCAGA AAAAGCTGAC AAAATATCTT CATTCCTTGC AACTGAGGAC
ATGTTTGTAC TAGGAACTAT TGATAAGGGA TTTATCATTG TAAAAAATGT GAACAACTTA
GTACAACAAA CTAATTTAGT ACAAGACAAT GCGTGGCATC TTACAAAAAA TACACAGGGT
TTCCTTGTAT CATCTGAATC TGAAAGAATA GATCTGTTCG ATATGGATTT CAACCGAATT
AATAGCTTTG ATACTCAATC ACAAGGCTAC AAATATGCAA TTCTTAATAA AGATGGATTA
TATTTTGGAA CTCATTCCGG TTTGTTTTTA AAGAACAAAG AAAATTTAGT ACTAATTAGT
GAAAAATCAA TATCATCTTT ATCTAGCAGT AAAGATAACT CTATCATAAC CGCTGGAACA
TCAGATGGTA AGGTATTGAT AATAAAAAAT AAAGAAGTAA CCAATATAAT TGACACCCAA
AAAAATGAGC CTATTTTCGA TATTGAATTA GTGACATTGA ATGATATTTA CATAGCAGGC
CAAGGTGGTT TCAAAAAGTA TGAGAATGGA TTATTACAAA ATTTAGGGGA AGAAATAACA
TATAGCATAG TCGATGGTGA TGATGGCATT TACTTTGGAA CATCTACATC ACTAATGTTT
TACAATAGAG AAAACAACAA TGTTTCCCAA GTGTTTACCA ACAAAAAAGA AATTTATTCA
ATCACAAATA ACAATGACTT AGTGATAGCT GCATCATTAG GTGAAGTAGT TATATATGAA
AAGAAAAGTA AAAAAATATA TACTTTAAAT ACTGCGAACG GAAGTCAGTA TGAATACAAT
TCGCCGAGCG CAATAGATGT GAATGGTTAT GTTCTACTTG CAGGAATAAA TGGTGTTAGT
ATTTTACACC CAAAAAATGT CATAAACTAT ATTAAAAACA AAGAAATCAA CAAAACAGAA
ATATCTGATT TCCTAGTTTT CAATGTGCCA CAAGAAAATG ATAGCATTTT CTTTAATAAC
AAAAATTCAA TTATTAATGA AATAACCTTA AAATATTCAG ACTACCCATT TTCCTTTAAC
TTTATTTCAC CTCTGTCAGA AGATTCGTCT ACTGATTATC ATTATAGGAT GTATGGCCTT
TCTGACACAT GGATATCGGC GAATGGAACA AATTCAGCTA CATATACAAA TTTGTCTCCT
GGAAAATATC AGTTTCAAGT ATATGCAGTC AATTCTCTTT CCAGTAAACA ATCCCCCGTA
AAGGAGGTTA CTGTCATTAT TACTCCTCCA TGGTGGTCTT CAACTCAAGC CAAAGTATTT
TATTTCATTA TTTTAATGCT TTTCTCTCTC TTTATCTTCA AAGCAATCCT ACGCAAACGA
GAAATCCAAC GACAAATTGC ATTAAGCGAA GAACGCCTAA AGCTTTCTTT ATGGGGAAGT
GGCGATGAAA TGTGGGACTG GGATATTGAG ACCGGCAATA TTTTCCGTTC GAATATTTGG
GGGGCATTGG AATTTCCGAG GGATGGTCAC CGTTCTGGCA ACAGTGATGA AGAAAGTAAT
ATTCATCCCA TGGATCAAGA ACGTGTAAGA GAAGCGCTCA ATAAACACTT CTACGGTGAA
ACCGATCATT TTGAAGCGGC ATATAGAGTT AAAGGCAAAG ATGATAGTTG GATCTGGATC
CTAGACAGAG CGAAAATCGT AGAAAGAGAC GACAAAGACA ATGCGCTACG GATGACGGGG
ACAATTAAAA ACATCAGCCA GTTCAAGCAA AAGGAAGAAC AATTAAAACT GTTCGAAAAA
GCCATTGAAA ATATTTCCGA AGGTATGTTT ATTCTCGACA GTGAATATCG ATTTGTTGAG
GTGAACGAAG CGTGCTGTAG AATCTCTCAG CGTAATCGAA CTGATTTTAT TGGTAATCTG
CTTACCTTCG ATTTGTATCC GGAGTCCTTT ACTAATCAAA TTCGTACCAT GTTAAAACAA
CAAGGTCGTT GGGCCAGCGA AGTTGAAGCA AGCCGTGGTG ACAAGAGCCA TTTCCATATG
GAACTCACAA TTGACGCCAT TTACGATGAA TTAGGTGAGT TATCGCATTA CGTTGGAGTA
TTTTCTGATA TATCAAGACG TAAACAGCAA GAAGAAGAGC TTCGTAAACT CACCAACAAT
GACCTATTAA CGGGGCTGCC CAATCGCTCA AACTTGCAAG TCACATTAGG AAACTTGGTT
AATAAAGAAA TTACCCATGC CTTAATGGTA CTCGATCTCG ACAATTTTAA GCGTATCAAT
GACTCATTAG GCCATCAAAT TGGTGATCAG TTACTCAAAC TTGTTTCCGT CAGAATTAAG
TCTGTTGTAC CTAAAAACAC CAGTATCTAT CGCCTAGGTG GCGATGAGTT TGCGATTGTA
CTAGATAAAA CATCTGACAT TAGTGCCTGT GCCGCGATTG CAGGACGTGT CATTGAAGCC
TTTAAAACCA TATTTGAAAT CGGCAATGAG CAGCTGGTTT TGGGCGTAAG TATTGGTATT
GTTTTCTACC CTGAAGATGA ACAGAGTGAG CAAGCACTTC TGAGAAAAGC AGATATTGCC
ATGTATCATG CTAAATCTGC CGGCGGTAAT TGTTACCAAT TCTACTCAGA ATCCCTTAAC
CAACATGCGA TTAAACAATT AGAAATTGAA AACCTAATTC GTGAAGGATT AAAAGAAGAT
TTATTTGAGG TGTATTATCA ACCCAAAGTC GATCTTAAAA GTGGTCACGT CGCGGGGATG
GAAGCCTTAG TCCGTTTAAA TCATCCCACC CGTGGACTGG TCCCACCAAA TGATTTTATT
CCTCTTGCGG AAGAAAATGG TCTCATTATC GAAATCGGTG AAATTGTGCT TAGGAAAGCC
TGTTTTGCTG CGCAGAAATG GCGTGAACAA GGGCTATTTA AAGGAAGAGT CGCCGTCAAT
TTATCGTCAC GTCAGTTTGC CCTACCCGAT TTACAGCAAC GAATTGAAGC TATTTTACGG
TTAACACAAT TGCCAGCAGC ACATCTTGAA CTCGAAATCA CCGAAGGGAC GGTTATTAAG
CAGCCAGAAA TGGCTATAAC CGTTATGCAA CAATTAGCGA AGATGGGGGT TAGTCTAGCG
TTAGATGACT TCGGTACGGG TTACTCTTCG CTTTCTTACT TAAAACGATT CCCTATTCAT
ACGCTCAAAA TCGATAAAGC CTTTGTCGAT GATATTGATA AATCTGACCG AGATTTGAAG
ATGGTCGATT CGATCATCAC CATCGCTCAC AATATGGGTC TGTCGGTTGT CGGTGAAGGT
GTTGAACAAG CCGCACAACT AAATATCCTG CGCGCCCTTA ACTGCGAAGA AATACAAGGT
TATATCTTTA GCAAAGCGAT TAATGAAACC GAATTTACTC AATTGCTGCA AGATGATCGA
AGTAAATTCA TGCCCCACCA CAACATTATT TGA
 
Protein sequence
MASSDNTKNN TMPKILLKIV LIAFFGIHAL EDVNASPFSN KSPIILQSQS FGVPEGLSQS 
TVTSIVQDHD GYLWIGTFNG LNRFDGKHFR HFYSNDPRTG LPSSFIRSLL VDAQGLLYVG
TDNGLVVYDK LKDSFSPYSI SAKNAPIWSL NSSTNSLIVG TNNSIIDISN KEKTYELLSK
GLGEIKKVIK VNDTYYIRDY AGKLFSLTND ELKEVANHTI DFDEIKQSEV IVSFSNGLYE
YNENKSLKIT EESFSQFAKY ESTVYGFNDG KIINVSNGTT IGSIPSEKAD KISSFLATED
MFVLGTIDKG FIIVKNVNNL VQQTNLVQDN AWHLTKNTQG FLVSSESERI DLFDMDFNRI
NSFDTQSQGY KYAILNKDGL YFGTHSGLFL KNKENLVLIS EKSISSLSSS KDNSIITAGT
SDGKVLIIKN KEVTNIIDTQ KNEPIFDIEL VTLNDIYIAG QGGFKKYENG LLQNLGEEIT
YSIVDGDDGI YFGTSTSLMF YNRENNNVSQ VFTNKKEIYS ITNNNDLVIA ASLGEVVIYE
KKSKKIYTLN TANGSQYEYN SPSAIDVNGY VLLAGINGVS ILHPKNVINY IKNKEINKTE
ISDFLVFNVP QENDSIFFNN KNSIINEITL KYSDYPFSFN FISPLSEDSS TDYHYRMYGL
SDTWISANGT NSATYTNLSP GKYQFQVYAV NSLSSKQSPV KEVTVIITPP WWSSTQAKVF
YFIILMLFSL FIFKAILRKR EIQRQIALSE ERLKLSLWGS GDEMWDWDIE TGNIFRSNIW
GALEFPRDGH RSGNSDEESN IHPMDQERVR EALNKHFYGE TDHFEAAYRV KGKDDSWIWI
LDRAKIVERD DKDNALRMTG TIKNISQFKQ KEEQLKLFEK AIENISEGMF ILDSEYRFVE
VNEACCRISQ RNRTDFIGNL LTFDLYPESF TNQIRTMLKQ QGRWASEVEA SRGDKSHFHM
ELTIDAIYDE LGELSHYVGV FSDISRRKQQ EEELRKLTNN DLLTGLPNRS NLQVTLGNLV
NKEITHALMV LDLDNFKRIN DSLGHQIGDQ LLKLVSVRIK SVVPKNTSIY RLGGDEFAIV
LDKTSDISAC AAIAGRVIEA FKTIFEIGNE QLVLGVSIGI VFYPEDEQSE QALLRKADIA
MYHAKSAGGN CYQFYSESLN QHAIKQLEIE NLIREGLKED LFEVYYQPKV DLKSGHVAGM
EALVRLNHPT RGLVPPNDFI PLAEENGLII EIGEIVLRKA CFAAQKWREQ GLFKGRVAVN
LSSRQFALPD LQQRIEAILR LTQLPAAHLE LEITEGTVIK QPEMAITVMQ QLAKMGVSLA
LDDFGTGYSS LSYLKRFPIH TLKIDKAFVD DIDKSDRDLK MVDSIITIAH NMGLSVVGEG
VEQAAQLNIL RALNCEEIQG YIFSKAINET EFTQLLQDDR SKFMPHHNII