| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1442 |
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| Symbol | |
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| ID | 4256343 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 1677240 |
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| End bp | 1677911 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638122091 |
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| Product | pseudouridylate synthase |
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| Protein accession | YP_737498 |
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| Protein GI | 114046948 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.81175 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0720615 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGATAT TTGATTACCA GCCCCCTTCA GTCCCTTGGT TAGATCTTCG CTATCAAGAT
AGGGATTTGA TCATTATTAA TAAACCTTCT GGATTGTTGT CAAACCCCGG CCGAGCCGCA
CATACCTTCG ATTGTGCCCT CACCCGACTA CAACGCTTGT ATCCTGACAC CATTCTCGTG
CATCGACTCG ATTGCGCCAC CTCAGGCATT ATGGTGTTTG CGCGCAACAA GAAGGCCGAG
TCCCAGTTAA AAACCCAGTT CCAAGATAGG CAAAACGAGA AAGTGTATGT CGCCGAGGTC
ATGGGTTTGA TAGCAAAGGA TGCTGGGATA ATCGATTTAG CCATCGCGCC CGATCCCGAG
CACCCGCCCT ATCAAAAGAC TCAAACGGCG GGGACGGCTG GCGCCAAGAG TGCTCTGACC
CATTACCGAG TGCTAGAAAG ACGCGAAAAC AGCACCTTAG TCGAATTAAC GCCACAAACG
GGCCGTACCC ACCAGCTCAG GGTGCATATG CTCGCCTTGG GGCATCCCAT TCTTGGGGAT
GAGTTTTATG GCGATGATGA AGTGATAAAA GCCAGACCGA GACTCTGCCT TCACGCCCAA
AGTTTACGTT TTACCCATCC TTACTCGGGT AAAGCCATGC ATTTTTACAG TAAGCATCCT
TTCTCGGTTT AG
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| Protein sequence | MQIFDYQPPS VPWLDLRYQD RDLIIINKPS GLLSNPGRAA HTFDCALTRL QRLYPDTILV
HRLDCATSGI MVFARNKKAE SQLKTQFQDR QNEKVYVAEV MGLIAKDAGI IDLAIAPDPE
HPPYQKTQTA GTAGAKSALT HYRVLERREN STLVELTPQT GRTHQLRVHM LALGHPILGD
EFYGDDEVIK ARPRLCLHAQ SLRFTHPYSG KAMHFYSKHP FSV
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