Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1385 |
Symbol | |
ID | 4257278 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1603394 |
End bp | 1604407 |
Gene Length | 1014 bp |
Protein Length | 337 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 638122019 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_737441 |
Protein GI | 114046891 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | [TIGR03589] UDP-N-acetylglucosamine 4,6-dehydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00862014 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGTTAAACA GCAAAAAAGT TCTTATCACC GGTGGAACTG GATCTTTTGG TAAGCAGTTT ATTAAAACAA TTCTTGAGCG CTATCCTAAC GTTAAGCGGA TTGTGATTTT CTCACGTGAT GAATTAAAGC AATCTGAGTT GCGTTTGAAA TATCCACAAA AAGATTATCC ACAACTACGT TTTTTCATCG GTGATGTTCG TGATCGCAAT CGAATGGTTC AAGCGTGTGA AGGTATTGAT GTGATTATTC ATGCGGCCGC GATCAAGCAG GTTGATACCG CCGAATACAA TCCGACTGAG TGCATTCGCA CTAACGTTGA TGGTGCAGAG AACGTGATCC ACGCAGCACT GCAATGTGGT GTTAAGGATG TCGTAGCCCT GTCTACTGAC AAAGCCTGTG CGCCGATCAA CCTGTATGGA GCCACTAAGC TGACATCTGA CAAGTTGTTT ACTGCTGCCA ATAATATTAA AGGCTCGCGT GATATTCGTT TCAGTGTAGT GCGCTATGGC AACGTAATGG GTTCACGTGG TTCGGTGATC CCATTTTTCC TTAAAAAGCG TGATGAGGGT GTATTGCCAA TCACCCATGA AGAGATGACG CGCTTTAATA TTTCACTGCA AGATGGGGTT AACATGGTGA TGTTCGCCAT TGAACATCAT CTGGGTGGTG AAATTTTTGT GCCAAAAATT CCATCTTATA AAATCCTTGA TATTGCCGAA GCAATTGCTC CTCGGTGTGA AACCAAGGTA GTGGGTATTC GCCCAGGTGA AAAACTACAT GAGGAGATGA TCACTGATAC TGACTCTTTG AATACTATCG ACCTAGGCCG TTATTACGCA ATATTACCCT CAGTATCATT TAGTCATACT GAAGAGGACT ATATTAAGCA TCATAACGCA CATAAGGTAC CATTTGGCTT TAAATATAAC TCTGGTACGA ATACTGATTG GGAAACTGTC GAGTCACTTC GTGAACTGAT TAAAACCCAT GTTGATTCTA ATTTTGAAGT GTGA
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Protein sequence | MLNSKKVLIT GGTGSFGKQF IKTILERYPN VKRIVIFSRD ELKQSELRLK YPQKDYPQLR FFIGDVRDRN RMVQACEGID VIIHAAAIKQ VDTAEYNPTE CIRTNVDGAE NVIHAALQCG VKDVVALSTD KACAPINLYG ATKLTSDKLF TAANNIKGSR DIRFSVVRYG NVMGSRGSVI PFFLKKRDEG VLPITHEEMT RFNISLQDGV NMVMFAIEHH LGGEIFVPKI PSYKILDIAE AIAPRCETKV VGIRPGEKLH EEMITDTDSL NTIDLGRYYA ILPSVSFSHT EEDYIKHHNA HKVPFGFKYN SGTNTDWETV ESLRELIKTH VDSNFEV
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