Gene Shewmr7_1384 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1384 
Symbol 
ID4257277 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp1602091 
End bp1603065 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content41% 
IMG OID638122018 
Productlipopolysaccharide biosynthesis 
Protein accessionYP_737440 
Protein GI114046890 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3765] Chain length determinant protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00868672 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGAATACAC AAATTACTCA AAATCCAAAC ACATACCAAT CCGACGCCAG ATTCCCCCAA 
GTACAAGAAG ACGAAATCGA TCTTCGTGAG CTTTTTGCCG TCATCTGGCA AGGAAAATGG
CTCATTATTG CCATAACTAC TGTTTTTGCC ATTGCCTCTG TAGTCTTTGC TATTTTACAG
CCCAATATTT ATAAATCAGA AGCTTTGTTA GCTCCAGCAT CAGAGGAACA GGGTGGTGGT
TTAAGTGCTT TGGCATCACA GTTTGGTGGT CTAGCGAGCC TTGCTGGGGT TAACCTCGGC
GGAAAAGGCG GTACAGATAA AACCCAGCTT GCAATTGAAG TATTAAAATC CCGCCAATTT
ACCAGTGAGT TTATTCAAAA GCACAATATC CTTGCTGAGT TAATAGCAGC CAAAAAATGG
GATAGGGATA CGGATAAGAT TATCTATGAC CCTGAGTTAT ACAACGAGCA AACGAATACT
TGGGTGCGCG ATGTAGAACC ACCATTTAAA CCTGAACCAT CGATGCAAGA AGCCTATAAA
GAATTCAGTA AAATTATTGC TGTTAATAAA GATAAAGAGA CTGCTATGGT GATCATTTCG
GTAGAGCACT TATCACCAAC AGTCGCACAA CAATGGGTTA CTTGGTTAAT TCAAGACATT
AATAAAGTGA TGAAGGAGCG CGATGTAGCG GAAGCGCACC GCAGCACTGA GTTTTTAAAT
AAGCAAATCG CTTTAACCAA TGTCGCCGAT ATCAAAACCA TACTTTACAA ATTGATTGAA
GAACAGGCAA AAACCATCAT GTTTGCCGAA GTACGCGATG AATACGTATT TAAAACCATC
GATCCCGCTT TAGCCCCTGA AGAAAAGGCT AAACCGAAGC GCGCATTAAT TTGCGTATTA
GGCACCATGC TCGGCGGTAT GTTAGGTGTA ATGTTAGTGC TGGTAAGGCA TTTTATGGGC
AAAGAACAAA ACTAG
 
Protein sequence
MNTQITQNPN TYQSDARFPQ VQEDEIDLRE LFAVIWQGKW LIIAITTVFA IASVVFAILQ 
PNIYKSEALL APASEEQGGG LSALASQFGG LASLAGVNLG GKGGTDKTQL AIEVLKSRQF
TSEFIQKHNI LAELIAAKKW DRDTDKIIYD PELYNEQTNT WVRDVEPPFK PEPSMQEAYK
EFSKIIAVNK DKETAMVIIS VEHLSPTVAQ QWVTWLIQDI NKVMKERDVA EAHRSTEFLN
KQIALTNVAD IKTILYKLIE EQAKTIMFAE VRDEYVFKTI DPALAPEEKA KPKRALICVL
GTMLGGMLGV MLVLVRHFMG KEQN