Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1384 |
Symbol | |
ID | 4257277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1602091 |
End bp | 1603065 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 638122018 |
Product | lipopolysaccharide biosynthesis |
Protein accession | YP_737440 |
Protein GI | 114046890 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3765] Chain length determinant protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00868672 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGAATACAC AAATTACTCA AAATCCAAAC ACATACCAAT CCGACGCCAG ATTCCCCCAA GTACAAGAAG ACGAAATCGA TCTTCGTGAG CTTTTTGCCG TCATCTGGCA AGGAAAATGG CTCATTATTG CCATAACTAC TGTTTTTGCC ATTGCCTCTG TAGTCTTTGC TATTTTACAG CCCAATATTT ATAAATCAGA AGCTTTGTTA GCTCCAGCAT CAGAGGAACA GGGTGGTGGT TTAAGTGCTT TGGCATCACA GTTTGGTGGT CTAGCGAGCC TTGCTGGGGT TAACCTCGGC GGAAAAGGCG GTACAGATAA AACCCAGCTT GCAATTGAAG TATTAAAATC CCGCCAATTT ACCAGTGAGT TTATTCAAAA GCACAATATC CTTGCTGAGT TAATAGCAGC CAAAAAATGG GATAGGGATA CGGATAAGAT TATCTATGAC CCTGAGTTAT ACAACGAGCA AACGAATACT TGGGTGCGCG ATGTAGAACC ACCATTTAAA CCTGAACCAT CGATGCAAGA AGCCTATAAA GAATTCAGTA AAATTATTGC TGTTAATAAA GATAAAGAGA CTGCTATGGT GATCATTTCG GTAGAGCACT TATCACCAAC AGTCGCACAA CAATGGGTTA CTTGGTTAAT TCAAGACATT AATAAAGTGA TGAAGGAGCG CGATGTAGCG GAAGCGCACC GCAGCACTGA GTTTTTAAAT AAGCAAATCG CTTTAACCAA TGTCGCCGAT ATCAAAACCA TACTTTACAA ATTGATTGAA GAACAGGCAA AAACCATCAT GTTTGCCGAA GTACGCGATG AATACGTATT TAAAACCATC GATCCCGCTT TAGCCCCTGA AGAAAAGGCT AAACCGAAGC GCGCATTAAT TTGCGTATTA GGCACCATGC TCGGCGGTAT GTTAGGTGTA ATGTTAGTGC TGGTAAGGCA TTTTATGGGC AAAGAACAAA ACTAG
|
Protein sequence | MNTQITQNPN TYQSDARFPQ VQEDEIDLRE LFAVIWQGKW LIIAITTVFA IASVVFAILQ PNIYKSEALL APASEEQGGG LSALASQFGG LASLAGVNLG GKGGTDKTQL AIEVLKSRQF TSEFIQKHNI LAELIAAKKW DRDTDKIIYD PELYNEQTNT WVRDVEPPFK PEPSMQEAYK EFSKIIAVNK DKETAMVIIS VEHLSPTVAQ QWVTWLIQDI NKVMKERDVA EAHRSTEFLN KQIALTNVAD IKTILYKLIE EQAKTIMFAE VRDEYVFKTI DPALAPEEKA KPKRALICVL GTMLGGMLGV MLVLVRHFMG KEQN
|
| |