| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1317 |
|---|
| Symbol | |
|---|
| ID | 4258066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1533545 |
|---|
| End bp | 1534165 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638121950 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_737373 |
|---|
| Protein GI | 114046823 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.237455 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCAGT CCTCCGATAT CCCGATGAGC CGCAGTGAAC AAAAGAAACA GCAAGTACTG
GTGGCGGCCA TTGACTTGTT TTGCCGCCAG GGGTTTCCCC ATACCAGCAT GGATGAAGTG
GCGAAACAGG CAGGCGTGTC CAAACAAACG GTGTACTCCC ATTACGGCAG TAAAGATGAT
TTGTTTGTGG CGGCGATTGA ATCCAAATGC GTTGGCCACA ACTTAAATGC CGACTTACTC
AGCGATCCAA GTCAACCCGA AGCCACCCTC ACCGAATTTG CGCTGCAATT TGGTGAGATG
ATTGTTAGCC CTGAGGCGAT TACCGTATTT AAAGCCTGTG TGGCGCAATC GGAGAGCCAC
CCTGAAGTGT CGCGATTGTT TTTTGAGGCG GGGCCACAGC ATATGCTTGC GATGCTGACA
AAATATTTAA TCGCCGTAGA AGCGCTTGGG TTATATCGCT TTCCACAACC GCATCATTGT
GCGGTACGTT TATGTTTGAT GCTGTTTGGG GAATTGAAGC TCAGGTTAGA GTTGGGGCTT
GAAACAGAGC CTTTATTGGG GGAGCGTGAG CAGTATATTC GGGGTTGTGC CGAGATGTTT
TTAAAAGCCT ACCGAGTGTA A
|
|---|
| Protein sequence | MTQSSDIPMS RSEQKKQQVL VAAIDLFCRQ GFPHTSMDEV AKQAGVSKQT VYSHYGSKDD
LFVAAIESKC VGHNLNADLL SDPSQPEATL TEFALQFGEM IVSPEAITVF KACVAQSESH
PEVSRLFFEA GPQHMLAMLT KYLIAVEALG LYRFPQPHHC AVRLCLMLFG ELKLRLELGL
ETEPLLGERE QYIRGCAEMF LKAYRV
|
|---|
| |