Gene Shewmr7_1164 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_1164 
Symbol 
ID4258282 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp1355381 
End bp1356484 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content50% 
IMG OID638121785 
ProductGTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase 
Protein accessionYP_737220 
Protein GI114046670 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase
[COG0807] GTP cyclohydrolase II 
TIGRFAM ID[TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00615809 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.131368 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGCTGC ACAGTATAGA AGAGATCATC GAGGATATTC GTCAAGGCAA AATGGTTATT 
TTGATGGATG ACGAAGACAG AGAAAACGAA GGCGACCTGA TTATGGCGGC CGAGCTGGTC
ACGCCTGAAG CGATTAACTT TATGGCGAAA TACGGTCGTG GACTCATCTG TCAAACGATG
ACTAAAGCCC GTTGCCAGCA GTTAAACCTG CCCTTGATGG TGACTAATAA CAATGCGCAG
TTCTCGACTA ACTTTACGGT ATCGATTGAA GCGGCAGAAG GCGTAACCAC TGGGATTTCG
GCCCACGATC GCGCCGTAAC GGTAAAAGCG GCCGTGGCTA AAGATGCCAA GGCATCGGAT
TTAGTACAGC CGGGTCATAT CTTCCCATTA ATGGCGCAGG ACGGTGGCGT GTTAACCCGC
GCAGGTCACA CGGAAGCGGG TTGTGATTTA GCCCGTTTAG CAGGGCTTGA GCCATCGGGG
GTGATTGTTG AGATCCTCAA TGAAGACGGC ACTATGGCTC GTCGCCCTGA TTTAGAGATT
TTCTCTGAAT TACATGGGAT TAAAATCGGC ACTATTGCGG CGCTTATCGA ATACCGCAAC
ACCAAAGAAA CCACAGTCGT GCGCGAAGCT AAATGTAAAC TGCCAACCCG CTTTGGCGAG
TTCGACATGG TGACCTTTAG GGATACTATC GACAATCAAC TGCACTTTGC CTTAGTGAAG
GGCGAGGTGA AACCGGATTG TTTAGTGCGC GTACACTTAC AAAATACCTT CAACGATTTA
CTCCACTCAG AGCGTGATCA GCAGCGTAGT TGGCCGCTTG AAAAAGCCAT GGAGCGCATT
TCTGCCGAAG GTGGTGTGTT GGTGTTGCTG GGCAATCAAG AGCACCCTTG TGAAATCCTC
TCTAAAGTCA AAGCCTTTGA AGCTGAAGAT CAAGGTCAAG CGCCAGCCTC TGCAAAATGG
CAAGGCACTT CGCGCCGTGT AGGTGTAGGC TCACAAATTC TGGCCAGCCT TGGGGTAACT
AAAATGCGAC TCTTAAGTTC GCCTAAGCGT TATCATTCAC TCTCAGGTTT TGGTCTTGAA
GTGACCGAGT ACGTGGCGGA GTAA
 
Protein sequence
MALHSIEEII EDIRQGKMVI LMDDEDRENE GDLIMAAELV TPEAINFMAK YGRGLICQTM 
TKARCQQLNL PLMVTNNNAQ FSTNFTVSIE AAEGVTTGIS AHDRAVTVKA AVAKDAKASD
LVQPGHIFPL MAQDGGVLTR AGHTEAGCDL ARLAGLEPSG VIVEILNEDG TMARRPDLEI
FSELHGIKIG TIAALIEYRN TKETTVVREA KCKLPTRFGE FDMVTFRDTI DNQLHFALVK
GEVKPDCLVR VHLQNTFNDL LHSERDQQRS WPLEKAMERI SAEGGVLVLL GNQEHPCEIL
SKVKAFEAED QGQAPASAKW QGTSRRVGVG SQILASLGVT KMRLLSSPKR YHSLSGFGLE
VTEYVAE