| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1097 |
|---|
| Symbol | |
|---|
| ID | 4258668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 1266100 |
|---|
| End bp | 1267002 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638121718 |
|---|
| Product | lipoprotein NlpI |
|---|
| Protein accession | YP_737153 |
|---|
| Protein GI | 114046603 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4785] Lipoprotein NlpI, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00121066 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000284829 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTTA AAATTAGAAC CGCTGTTGTT GCTGTGCTGG CGGGTGCCAG CTTGATGTTG
GCTGGATGTG CGACCACTAA GTCTCCCTTA GACAACCAAA ATGACGTTGA AGGCAAGTTA
GTCATCGCTC CTGTGATGCC AGACTATAAA GTTGAAGTCA CCCTTGCCAA GCTAAATGAA
ATTTTATCGG CGGTTGAGCT AACCAACGAG CAGCGCGCAC GTTTTCATTA CGACCGTGGC
GTGATTTACG ATAGCGTCGG TTTACGCTTA ATGGCGCGCA TTGATTTTAT GCAGGCGCTT
AAACTGCAAC CCGACTTAGC CGATGCCTAC AATTTCCTTG GTATTTATTA CACCCAAGAG
GGTGAATACG ATAGTGCCTA TGAGGCGTTT GATGGTGTAT TAGAGCTGTC GCCAAACTAT
GACTATGCCT ACTTGAATCG CGGCATTGCG CTTTATTATG GCGATCGGAA CGATCTCGCC
TTAAAAGATA TGCAAGCATT TTACGCTGGC GATAATAAAG ATGGTTATCG CGCATTGTGG
TTATATCTGA TTCAATTCAA GGATAATGCT GAGGAAGCTA AACTTAAGTT ACAGGAACAC
CGTAAGGGAC TGGAAGCCGA TGCCTGGTCA ACTGTGATTG TTGATTATTA TCTTGGCGTT
AAGAGCCGCG AGCAGGTTTT TGCCGACGCC AAGTTAGGCC TGACCCACCC CAAAGAATAT
GCTGAGCGTC TATGTGAAGC GTATTTCTAC CTCGCGAAAA TCGAAATTGC CAAGAATCAA
TATCAAGAGG CGGCAAATTA TTTCCGTCTT GCCCTCGCGA CCAATATCTA TGACTTTGTT
GAGCACAGAT ACGCGCGAAT TGAGCTAGCT AAAGTTAAAG GTTTGCTCGA AGGCACAAAA
TAA
|
|---|
| Protein sequence | MSLKIRTAVV AVLAGASLML AGCATTKSPL DNQNDVEGKL VIAPVMPDYK VEVTLAKLNE
ILSAVELTNE QRARFHYDRG VIYDSVGLRL MARIDFMQAL KLQPDLADAY NFLGIYYTQE
GEYDSAYEAF DGVLELSPNY DYAYLNRGIA LYYGDRNDLA LKDMQAFYAG DNKDGYRALW
LYLIQFKDNA EEAKLKLQEH RKGLEADAWS TVIVDYYLGV KSREQVFADA KLGLTHPKEY
AERLCEAYFY LAKIEIAKNQ YQEAANYFRL ALATNIYDFV EHRYARIELA KVKGLLEGTK
|
|---|
| |