| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1096 |
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| Symbol | |
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| ID | 4258667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1263809 |
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| End bp | 1265908 |
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| Gene Length | 2100 bp |
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| Protein Length | 699 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638121717 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_737152 |
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| Protein GI | 114046602 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0013386 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00237644 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | GTGAATCCAA TTGTAAAGAG TTTTGAGTAT GGTCAACATA CAGTCACCCT GGAAACAGGT
GTCATTGCAC GTCAAGCAGA CGCTGCCGTT TTAGCTAGCA TGGGTGACAC GACAGTGTTA
GTCACTGTTG TTGGTAAAAA AGAAGCTGAA GCCGGTCGTG ACTTCTTTCC TCTGACTGTT
AACTATCAAG AAAAGACCTA CGCAGCGGGT AAAATTCCTG GTGGTTTCTT TAAGCGTGAA
GGCCGTCCTT CAGAAGATGA GACATTAATC GCTCGCCTGA TCGACCGTCC GATTCGTCCT
CTTTTCCCTA ATGGTTTCAC AAACGAAGTT CAAGTGATCA TCACTGTAGT ATCCGTCGAT
CCACAAATCG AGCCGGATAT TATTTCGATG ATTGGTACTT CGGCTGCGCT TGCCATTTCG
GGTATTCCAT TCAGCGGTCC ATTAGGTGCG GCGCGTGTGG GTTACATCAA TGGCGAATAT
GTGCTTAACC CAACGGTTAC TCAGTTAGCA AACAGCCAAC TGAACCTAGT TGTTGCTGGT
ACTGAGGGCG CGGTATTGAT GGTTGAGTCA GAAGCTCAAG CCTTACCAGA AGAAGTGATG
TTAGGCTCAG TGGTTTATGG CCATGACCAA CAACAAGTGG TTATCAAAGC GATTGCTGAA
TTCAAAGCAG AAGCGGGTAA ACCAGCTTGG AATTGGACTG CACCTGTTGC CAACGAAGCC
TTAGTTGCTC AAGTTAAAGA ATTAGCCGAA GCCGGTTTAG CGCAAGCGTA TCAAATTCAA
GTTAAACAAG AGCGTTATGC TCAAGTTGCT GTGGTTAAAG CTGCTGCTAA AGAAGCGCTG
TTGGCTGCAA ACCCTGAAGT GGATTTACGT GAAGTTGACG GTCTGCTCGG TAGCTTAGAG
AAGAAAGTGG TTCGTGGTCG CATCATCCGT GGTGAGCCGC GTATCGACGG TCGTGAGCCA
GACATGGTTC GCGCATTAAG CGTATTAGCA GGCGTATTAC CACGTACTCA CGGTAGTGCA
CTGTTTACCC GTGGCGAAAC TCAAGCACTG GTAACTTGTA CTCTAGGTAC TGAGCGTGAC
GCACAGAAGA TTGATAGCAT CATGGGCGAG CGTACTAACC GCTTTATGCT GCACTACAAC
TTCCCTCCTT ACTCAGTCGG TGAGACAGGT ATGGTGGGTT CACCTAAGCG TCGCGAAATC
GGCCACGGCA AGTTAGCATG GCGCGGTATC AACGCAGTAA TGCCAACGGC TGAAGAATTC
CCATACAGTG TTCGTGTGGT TTCTGAAATC ACAGAATCTA ACGGTTCAAG CTCTATGGCA
TCAGTGTGTG GTACGTCTCT TGCGCTGATG GATGCGGGTG TTCCAATCAA GACTTCTGTA
GCGGGTATCG CTATGGGTCT AGTAAAAGAA GGCGACAACT TTGTTGTTCT GTCTGACATC
TTAGGTGATG AAGACCACTT AGGTGACATG GACTTCAAAG TAGCCGGTAC TCGTGATGGT
GTTACTGCAC TGCAAATGGA CATCAAGATC GAAGGTATCA CCAAAGAAAT CATGGAAATT
GCACTGCAAC AAGCCTATGG CGCACGTGTA CATATCCTGA ACGTGATGGA CCAAGCGATT
GGTTCACACC GTGATGATAT CTCTGACCAC GCTCCACGTA TCACAACTAT CAAGATCAAC
CCAGAGAAGA TCCGTGATGT TATCGGTAAA GGCGGCGCAG TGATTCGTGC TCTGACCGAA
GAAACTGGTA CCACAATTGA ACTGGAAGAT GATGGTACAG TGAAAATTGC TTCTTCAAAT
GGTGAAGCGA CAAAAGAAGC GATTCGCCGT ATCGAAGAAA TCACTTCAGA AGTTGAAGTG
GGCCGTATCT ACAACGGTAA AGTTATCCGT ATCGTTGACT TCGGTGCCTT CGTTAACATT
CTGCCGGGTA AAGATGGTTT AGTGCACATT TCGCAAATCA GCGATGAGCG TGTTGCTAAC
GTTTCTGACC ACCTTGAACT GAACCAAGAA GTGACTGTTA AAGTGATGGA AGTGGATCGT
CAAGGCCGTG TAAGACTGTC AATCAAAGAA GCACAGACTA AAGAAGCCGC TGCTGAATAA
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| Protein sequence | MNPIVKSFEY GQHTVTLETG VIARQADAAV LASMGDTTVL VTVVGKKEAE AGRDFFPLTV
NYQEKTYAAG KIPGGFFKRE GRPSEDETLI ARLIDRPIRP LFPNGFTNEV QVIITVVSVD
PQIEPDIISM IGTSAALAIS GIPFSGPLGA ARVGYINGEY VLNPTVTQLA NSQLNLVVAG
TEGAVLMVES EAQALPEEVM LGSVVYGHDQ QQVVIKAIAE FKAEAGKPAW NWTAPVANEA
LVAQVKELAE AGLAQAYQIQ VKQERYAQVA VVKAAAKEAL LAANPEVDLR EVDGLLGSLE
KKVVRGRIIR GEPRIDGREP DMVRALSVLA GVLPRTHGSA LFTRGETQAL VTCTLGTERD
AQKIDSIMGE RTNRFMLHYN FPPYSVGETG MVGSPKRREI GHGKLAWRGI NAVMPTAEEF
PYSVRVVSEI TESNGSSSMA SVCGTSLALM DAGVPIKTSV AGIAMGLVKE GDNFVVLSDI
LGDEDHLGDM DFKVAGTRDG VTALQMDIKI EGITKEIMEI ALQQAYGARV HILNVMDQAI
GSHRDDISDH APRITTIKIN PEKIRDVIGK GGAVIRALTE ETGTTIELED DGTVKIASSN
GEATKEAIRR IEEITSEVEV GRIYNGKVIR IVDFGAFVNI LPGKDGLVHI SQISDERVAN
VSDHLELNQE VTVKVMEVDR QGRVRLSIKE AQTKEAAAE
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