| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1093 |
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| Symbol | truB |
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| ID | 4258664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1260125 |
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| End bp | 1261078 |
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| Gene Length | 954 bp |
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| Protein Length | 317 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638121714 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_737149 |
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| Protein GI | 114046599 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0247742 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAGAC GTTCAAAGGG TCGCTTTATC GACGGTATCG TGTTGTTGGA CAAGGCCACA
GGGATGAGCT CCAACTTTGC ACTACAACGA GTAAAGCGCT TTTTTAATGC CAACAAAGCA
GGGCACACGG GGGCACTCGA TCCTTTGGCA ACGGGTATGC TACCTGTGTG TTTAGGCGAA
GCGACTAAGT TTTCGCAGCA TTTGCTCGAT TCGGATAAGC GTTATCTGGT TACCGCAAAA
CTGGGACAAC GCACAGATAC TAGCGACTCT GACGGTGAAG TGGTGCAGAC TCGCCCGCTC
GAATTTACTG AGGCGCAGTT AATGTCCGCC TTAGAGCATT TTCGTGGCGA TACCCAGCAA
GTGCCCTCCA TGTATTCGGC GCTGAAATAC CAAGGCCAGC CCTTGTATAA GTATGCCCGC
GAGGGGATTG AAGTGCCCCG CGAGGCGCGT CCTATCACTG TCTTCGAGCT GAACTTCATC
AGTCTAGAAG GCGATGAGCT GACCTTAGAC ATTCATTGCT CTAAGGGCAC TTATATTCGC
ACTATCATCG ATGATTTAGG TGAGATGCTC GGTTGTGGCG CCCATGTGAT TATGCTGCGT
CGTACTCAAG TCGCGCATTA TCCCTACGAC AAAATGGTCA CCTTGGAGCA ACTCGAAGCC
TTAGTCGCTA AGGCGCAGGA AGAGCAGCTT GACTCTAGCA GCTTGCTGGA CTCGTTGTTG
CTGCCTATGG ATACCGCGGT TGCTGACTTT CCCGAGGTTA ATGTGCCTGA TGCAAGCGCT
GCTTACTTAA TGCAAGGTCA GGCGGTACGT GTCTCAGGAC TCGTTGCAGA TAAGTTGGTG
CGCATTACGT TGGGCACTGA GCGTCGTTTC GTCGGAATTG GCAAGATGAA CGAAGATGGT
TTACTGGCGC CTAAGCGCTT AGTCGTGATC CACGACCAAG CTAAAGCATC TTAA
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| Protein sequence | MARRSKGRFI DGIVLLDKAT GMSSNFALQR VKRFFNANKA GHTGALDPLA TGMLPVCLGE
ATKFSQHLLD SDKRYLVTAK LGQRTDTSDS DGEVVQTRPL EFTEAQLMSA LEHFRGDTQQ
VPSMYSALKY QGQPLYKYAR EGIEVPREAR PITVFELNFI SLEGDELTLD IHCSKGTYIR
TIIDDLGEML GCGAHVIMLR RTQVAHYPYD KMVTLEQLEA LVAKAQEEQL DSSSLLDSLL
LPMDTAVADF PEVNVPDASA AYLMQGQAVR VSGLVADKLV RITLGTERRF VGIGKMNEDG
LLAPKRLVVI HDQAKAS
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