| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1087 |
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| Symbol | |
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| ID | 4257994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 1253412 |
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| End bp | 1254194 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638121706 |
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| Product | triosephosphate isomerase |
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| Protein accession | YP_737143 |
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| Protein GI | 114046593 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0149] Triosephosphate isomerase |
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| TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00059681 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.0654899 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACTCA GACGTCCTAT GGTAGCTGGC AATTGGAAGA TGAACGGCAG TGCGGCATTA
GCACAAGAGT TGTTCAAGAA ATTTGCCTCA AAGCTCCAAA ATGATTCAGC TGAAGTGGTT
TTATGCCCGC CTTCTATCTA TCTAGAAAGC GTCAGGCAGC TGCTAGAAGC AAACAAGGAA
GCGTTAGACG GTTCACTTGT TAGGATGGGC GCTCAGAATT TAAGTCAACA TGACTTTGGC
GCTTATACCG GAGAAGTTTC GGGTCAGATG CTTAAAGATT GCGGATGTCG ATATGTGATT
ATCGGGCATT CAGAACGTCG CCGTATGTAC GGAGAGACGA GTAATATCGT AGCGGAGAAA
TTCGCCGCTG CACAAAAGCA CGGTTTAACC CCCATTTTAT GTGTGGGTGA GTCTGGTCCA
GCACGTGAAG CAAGACGTAC CTTCGAGGTG ATTGCGGAAG AGTTGGATAT AGTGATCCAG
AAAAATGGCA CTATGGCTTT TGATAACGCC ATTATCGCTT ACGAGCCGTT ATGGGCCGTA
GGGACTGGTA AGAGCGCGAC ACCAGAGCAG GCACAAGAAG TACATGCGTT TATACGCAAG
CGTCTCTCTG AAGTGTCTCC GTTTATCGGA GAAAATATCA GGATCTTGTA CGGTGGCAGT
GTGACACCGA GTAATGCGGC AGATTTATTT GCCCAACCTG ATGTTGATGG TGGACTGATT
GGCGGTGCCA GTTTAAACTC TACCGAGTTT TTAAGTCTGT GTACCATAGC GATGAGCGCA
TAA
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| Protein sequence | MALRRPMVAG NWKMNGSAAL AQELFKKFAS KLQNDSAEVV LCPPSIYLES VRQLLEANKE
ALDGSLVRMG AQNLSQHDFG AYTGEVSGQM LKDCGCRYVI IGHSERRRMY GETSNIVAEK
FAAAQKHGLT PILCVGESGP AREARRTFEV IAEELDIVIQ KNGTMAFDNA IIAYEPLWAV
GTGKSATPEQ AQEVHAFIRK RLSEVSPFIG ENIRILYGGS VTPSNAADLF AQPDVDGGLI
GGASLNSTEF LSLCTIAMSA
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