Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0926 |
Symbol | mdoD |
ID | 4255348 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 1058083 |
End bp | 1059897 |
Gene Length | 1815 bp |
Protein Length | 604 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638121537 |
Product | glucan biosynthesis protein D |
Protein accession | YP_736982 |
Protein GI | 114046432 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000374583 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.530607 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTAGATT CTGGCGAACT GATGGAGATA GAGGTATGGT TATCACTGTC ATCAACAGTT CTCCACAGGG CAGTCACTGC AATATTGCTT ACTTTTGCAG AGAAGTGTCA GGAAGTTACA CCAAATCAGA GTCTGCTTAT GCAACCCAAT TTATTTCCCG AACAAAGACA TTTAAATCGT GAGCCGATGG TGATGCCGTC GGTGGAAGCT CAGTCTACCC GTAGCCGTTT ACAACGCATG GTGGGCAGTG TGCTACTCAC TTGCAGCGTG TTGTTAAGCT TATCTGCTTG TGCAGCGGGT AAGGCGAGCG CACCGCAGGA AGAAGAGTTT AGCTACGCCT GGTTGAAAGG CTATGCCCAT ACGCTGGCGG CTGAGTCCTA TGTGAGCCAT AAGGGCGAGT TACCAAAAAG CTTACAGGGC ATGAGCTGGG ATGATTACCA GCAGTTCCAT TTCAAGAAAA AAGCCGCCCT GTGGCGTGAG GATGATTCGG AGTTTCGCGC CGAGTTATTC CACTTAGGTC TGTACTTCGA TACGCCTGTG CATATTTACC AATTGGAAAA TGGCAAGGCT AAGCTGATCG AATATTCGTC TTCCATGTTC GATTACGGTA AATCCAAGGT AAAGGGTAGC CAGCTACCAA AAGACCTAGG CTTTGCTGGG TTTAGAATGC AGTTTAATAC CGACTGGCAG CGTGACGTGG TCGCCTTCTT AGGTGCCAGC TATTTCCGCG CCGTAGGTCA GGAAATGCAA TATGGTCTAT CTGCCCGTGG TTTAGCGGTA GACACTGCGC TGCCTAAGCC TGAAGAATTT CCTATGTTTA CCCGTTTCTG GTTAGAGAAA CCACAACCGG GTTCTAATAT TGCGACTGTG TACGCTCTGT TAGATTCACC AAGTGTAACA GGGGCTTACC GTTTTGATAT CGAACCGGGT GAGCGTTTAA AAATGAAGGT CGATGCGGCG ATTTACCCGC GTAAAGCCAT CGAACGTTTA GGCGTTGCAC CACTGACCAG TATGTACATG GTGGGTGAAA ACGATCGCCG CACCGGTTAC GACTGGCGCC AAGAGATCCA CGATTCAGAC GGTCTTGCCA TGCACACAGG TAACGGTGAA TGGATTTGGC GTCCGCTGGG TAACCCAAGC AACCTGCGTT TCAATGCCTA TAGCGATGAG AATCCAAAGG GCTTTGGTTT AATGCAGCGC GACCGTAATT TCGACCATTA TCAAGATGAT GGTGTGTTCT ACGAGAAGCG TCCAAGCCTG TGGATTGAGC CAACTGGCAA CTGGGGTAAA GGTTCGGTGC AGTTAGTGGA AATTCCAACA CTGGATGAAA CCTTCGACAA TATCGTGGCG TTTTGGAATC CTGCAGAGCC CATTCAACCG GGTCAAGAGT TGCTCTACAG CTACAACATG TACTGGGGCG GTATTCCACC TGTGCAGTCA CCCCGTGCCC GCGTAGTCGA TACCTTTACT GGTATTGGTG GTGTGGTTGG TCAAAAGCGT AAGTACTATA GCAAGCGCTT TGTGATTGAT TTTGCTGGTG GTTCCTTACC TATGCTGGGT AAAGATACCC AAGTGAAAGC GGTGATTTCG ACCTCTCAGG GTCGTGTAGA AATCGAATCT GCTCGCCCAC AACATGCGAT CAACGGTTAC CGCGCTATGT TTGACCTAGT GCCGCCAGAA GACAGCGTTG AGCCGATTAA CCTCAGAGTT TACTTAGAGG TAGATGGTCA GCCATTAACT GAGACTTGGA TGTACCAGTG GACACCACCA CCAGTGAACG AGCGTGAGTT GCATAACGCC GGTCATCTGC AGTAA
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Protein sequence | MLDSGELMEI EVWLSLSSTV LHRAVTAILL TFAEKCQEVT PNQSLLMQPN LFPEQRHLNR EPMVMPSVEA QSTRSRLQRM VGSVLLTCSV LLSLSACAAG KASAPQEEEF SYAWLKGYAH TLAAESYVSH KGELPKSLQG MSWDDYQQFH FKKKAALWRE DDSEFRAELF HLGLYFDTPV HIYQLENGKA KLIEYSSSMF DYGKSKVKGS QLPKDLGFAG FRMQFNTDWQ RDVVAFLGAS YFRAVGQEMQ YGLSARGLAV DTALPKPEEF PMFTRFWLEK PQPGSNIATV YALLDSPSVT GAYRFDIEPG ERLKMKVDAA IYPRKAIERL GVAPLTSMYM VGENDRRTGY DWRQEIHDSD GLAMHTGNGE WIWRPLGNPS NLRFNAYSDE NPKGFGLMQR DRNFDHYQDD GVFYEKRPSL WIEPTGNWGK GSVQLVEIPT LDETFDNIVA FWNPAEPIQP GQELLYSYNM YWGGIPPVQS PRARVVDTFT GIGGVVGQKR KYYSKRFVID FAGGSLPMLG KDTQVKAVIS TSQGRVEIES ARPQHAINGY RAMFDLVPPE DSVEPINLRV YLEVDGQPLT ETWMYQWTPP PVNERELHNA GHLQ
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