| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0845 |
|---|
| Symbol | |
|---|
| ID | 4256638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 961338 |
|---|
| End bp | 962882 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 638121456 |
|---|
| Product | OmpA/MotB domain-containing protein |
|---|
| Protein accession | YP_736901 |
|---|
| Protein GI | 114046351 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.157754 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTATGA TATCTAATTT CAAACCTATC GTAGTAGCAG TTACTTCTGC ATTGTTACTT
AGTAGTTGTG CGGTTACGCA GTCGGTAGAG AATAATAAAG AAACAGTTAT TGGTTGTGCC
ATTGGTACTG GTATAGGTGC ATTAATCGGT AACTACATAG GTGGGAAAGA AGGTATGGCC
TATGGTGCAG CAGCAGGGGC TGCCATTGGA TGCACAGTCG GTTACGATTT TCAAAAAAAA
CGTGAAGCAC TTGAGGCATT AGCCAAAACT GAAAATCTCG ATATTCAATT CACTTCAATC
AGTGCATCAA CCAATGCAGA TAACCAACAA AATAGCTTAT TGATCAGTGC TAATAATCAA
GCGATGTCAA AGGAAGATCA GGAAAAATAT TCTGATTATC AAGTCGTAGG TATGGCCGCG
ACAATTTCTA GCACCGATGA AATGATGTTT GGCTCAGGCT CTGCGGAAGC GACAGCACAG
GCAAAACAGA AATTACAAAA ATTAGCCGCT ATCTATAAAG ATTCTAAACA GAACATCCTT
ATTACAGGTC ACACCGATGC AAGTGGCAGT GAATCGTTGA ATCAGACGTT AAGCGAAGCT
CGCGCGCGTT ATGTTGCCAC GCTTTTTAAC CAGGCAGGCA TTCCGACAGA AAGATTATTT
TTCCAAGGCG CAGGTGAATC ACAGCCTGTA GCGGCCAATA CTAATGAAAC TGGTAAGGCT
AAAAATCGTC GGGTGGAAAT TGTTGAAATT GAGGGTAAGC CAGAGCAGCT TCTGGCTTAC
TCTAACAAAC AAAAAACTAA TCTCAGTTAT TTATCTCGTC GCTCACAGGA TAAGGTTGCT
ACGGTCAAGC CGAGTGAAAC CACCGCAAAA TCTGTTGATG TTGCAAGTAA AGATGCACAA
ATCACCATGA CGCAATCTGA GATGGTGCAA TTAATTGAGC CTGCAAAGCA GCAAAAGGCT
TTAGTGGATT TTGGTGGTCA AAAAATGACG GATCCATCGA CTAACTTTGC TCAATTGGTC
GGAACGAAAA AAGAAAGCGG ATTTGCATTA TTTAGTAATG CCTATGCATC CGAAATATCG
AGCCTTAACT GTGCTGTCGA AGGACCAAGA GTGGCTGGAG ACGTGAAAAG TTTAGCGACG
GGTGAGAGTT ATAATCGCCA AGATTACAAT ACTGCTGATT ACTTACCAGG GATGAATGGT
ACGGTTTGGG TCAACAAAGT GAATGGTCAC TACATTGGTT TGTCCCCAGT TGCTGTGATT
AAAGATAGCG GCACGGCCGT TGCGGCGCCT AAAGTGAATA TTTGGAAAAA CTATAAGGGA
GCAAGTCAAG AAGCGCCTAG TTATGAGCTA TCAAGCCATG TTGAAACCTA CTATGGCGAT
AGGGGGTTGT TATATCGGAT TTTTACCACA GATAAAGATT CTCCAGTACG TTGCATAGAT
GTGGTAATGC CGATTGACAG GTCAGCTACA GCAATTACAG GTAAGTTGTA TTACGAAAAA
AATAAGACCG TTTATGAAGC AGGTTTTGAA CCTAAATTGT TATAA
|
|---|
| Protein sequence | MTMISNFKPI VVAVTSALLL SSCAVTQSVE NNKETVIGCA IGTGIGALIG NYIGGKEGMA
YGAAAGAAIG CTVGYDFQKK REALEALAKT ENLDIQFTSI SASTNADNQQ NSLLISANNQ
AMSKEDQEKY SDYQVVGMAA TISSTDEMMF GSGSAEATAQ AKQKLQKLAA IYKDSKQNIL
ITGHTDASGS ESLNQTLSEA RARYVATLFN QAGIPTERLF FQGAGESQPV AANTNETGKA
KNRRVEIVEI EGKPEQLLAY SNKQKTNLSY LSRRSQDKVA TVKPSETTAK SVDVASKDAQ
ITMTQSEMVQ LIEPAKQQKA LVDFGGQKMT DPSTNFAQLV GTKKESGFAL FSNAYASEIS
SLNCAVEGPR VAGDVKSLAT GESYNRQDYN TADYLPGMNG TVWVNKVNGH YIGLSPVAVI
KDSGTAVAAP KVNIWKNYKG ASQEAPSYEL SSHVETYYGD RGLLYRIFTT DKDSPVRCID
VVMPIDRSAT AITGKLYYEK NKTVYEAGFE PKLL
|
|---|
| |