Gene Shewmr7_0827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0827 
Symbol 
ID4256863 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp939037 
End bp939714 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content51% 
IMG OID638121438 
Productribosomal large subunit pseudouridine synthase A 
Protein accessionYP_736883 
Protein GI114046333 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000100067 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGATT TTATTTACCA ACCACCGACA ACTCCCTGGC TCGATGTGCT TTACCAAGAT 
AAAGACATTA TCGTGGTCAA CAAGCCTTCG GGATTATTGT CCGTGCCGGG TCGCGATCCC
GCCCATTACG ACAGTGTGTA TGCCCGAGTA AAAGCCGAGC ATCCCCATTG CCAAATCGTC
CATCGCCTCG ACATGGCGAC CTCAGGTGTT ATGGTGGTTG CGCTCATTCG TAGCGCCGAG
CGCGAGCTAA AACGCCAATT TCACGATAGA GAAACCAGCA AAACCTATCT CGCTCGGGTG
GCTGGTCATA TCAAAAACGA TACTGGCAGT GTGGATTACC CGCTAATCTG TGACTGGCCC
AATCGCCCAA AACAGAAGGT TGACCACGAA ATTGGTAAAC CCTCATTAAC TCACTTCGAG
GTGTTAAGCC GCGCCAAACG CTCGACTCTC GTTAAGCTAA AGCCGATTAC TGGACGCTCA
CACCAACTCA GGGTGCATAT GATGGCACTT GGGCATCCTA TTCTCGGCGA CGGCTTTTAT
GCCGATCCGC TGGCAAAATC CTTAGCACCG CGATTACTAC TCCACGCAGC AGAACTGACC
ATAAAACACC CTTATACGGG TGAGAGCATG ACGTTCAGTG CCGATGCCCC CTTTTGTGAG
CCAGAAGGTG AGCAATGA
 
Protein sequence
MTDFIYQPPT TPWLDVLYQD KDIIVVNKPS GLLSVPGRDP AHYDSVYARV KAEHPHCQIV 
HRLDMATSGV MVVALIRSAE RELKRQFHDR ETSKTYLARV AGHIKNDTGS VDYPLICDWP
NRPKQKVDHE IGKPSLTHFE VLSRAKRSTL VKLKPITGRS HQLRVHMMAL GHPILGDGFY
ADPLAKSLAP RLLLHAAELT IKHPYTGESM TFSADAPFCE PEGEQ