Gene Shewmr7_0795 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0795 
Symbol 
ID4256396 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp907442 
End bp908086 
Gene Length645 bp 
Protein Length214 aa 
Translation table11 
GC content50% 
IMG OID638121407 
Productouter membrane lipoprotein LolB 
Protein accessionYP_736852 
Protein GI114046302 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3017] Outer membrane lipoprotein involved in outer membrane biogenesis 
TIGRFAM ID[TIGR00548] outer membrane lipoprotein LolB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000501463 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATAATT TGAAGCGCTT CACAAAATCC ATTTTCTCTT GTATCGCCTT GAGCGGCCTA 
TTGTTTTTAG GCGGCTGCGA GACCCTGCCG CCAACGACAG ATCTCAGCCC TATTACGGTC
GACAATGCCA CGCAAGCCAA GGCGTGGGAA TTACAGGGGA AACTCGCTAT CCGCACGCCG
CAGGATAAGC TCAGTGCCAA TCTCTATTGG CGCCACAGTG AGGAGCGAGA CGAGCTCACC
CTCACCACTA TGCTCGGCAC CACAGTGTTG ACTTTGGATG CTACGCCTAA CTCTGCTCAT
CTGCATATCG ATGGCAAAGA TTTTCGCGAT AGCAACGCCC AAGCATTGTT AGAACGAGTC
AGCGGCTGGT CTATCCCGAT TAACGATTTA CCCTTATGGA TCACAGGTCA AGTCGGTGGT
TTAGATCGCG TTATCACCGT AGATAGCAAT GGCAAAACCA AACAAATTCA AAACTCACAA
ACCTTGCCGC CTTGGGTCGT CACATTTTTG AGTTGGCAGC CCCAAAGCGG TGCCGAGGTA
CCCTATCAGT TAAAGCTTGA ACGTGGTGAT TTACAGCTCA AGCTGCAACT CAATCAATGG
CAAGCCTTAG GTAAACCCTC AATACTGCTC GGAGAAAAAC CTTAG
 
Protein sequence
MNNLKRFTKS IFSCIALSGL LFLGGCETLP PTTDLSPITV DNATQAKAWE LQGKLAIRTP 
QDKLSANLYW RHSEERDELT LTTMLGTTVL TLDATPNSAH LHIDGKDFRD SNAQALLERV
SGWSIPINDL PLWITGQVGG LDRVITVDSN GKTKQIQNSQ TLPPWVVTFL SWQPQSGAEV
PYQLKLERGD LQLKLQLNQW QALGKPSILL GEKP