Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0795 |
Symbol | |
ID | 4256396 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 907442 |
End bp | 908086 |
Gene Length | 645 bp |
Protein Length | 214 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638121407 |
Product | outer membrane lipoprotein LolB |
Protein accession | YP_736852 |
Protein GI | 114046302 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3017] Outer membrane lipoprotein involved in outer membrane biogenesis |
TIGRFAM ID | [TIGR00548] outer membrane lipoprotein LolB |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000501463 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATAATT TGAAGCGCTT CACAAAATCC ATTTTCTCTT GTATCGCCTT GAGCGGCCTA TTGTTTTTAG GCGGCTGCGA GACCCTGCCG CCAACGACAG ATCTCAGCCC TATTACGGTC GACAATGCCA CGCAAGCCAA GGCGTGGGAA TTACAGGGGA AACTCGCTAT CCGCACGCCG CAGGATAAGC TCAGTGCCAA TCTCTATTGG CGCCACAGTG AGGAGCGAGA CGAGCTCACC CTCACCACTA TGCTCGGCAC CACAGTGTTG ACTTTGGATG CTACGCCTAA CTCTGCTCAT CTGCATATCG ATGGCAAAGA TTTTCGCGAT AGCAACGCCC AAGCATTGTT AGAACGAGTC AGCGGCTGGT CTATCCCGAT TAACGATTTA CCCTTATGGA TCACAGGTCA AGTCGGTGGT TTAGATCGCG TTATCACCGT AGATAGCAAT GGCAAAACCA AACAAATTCA AAACTCACAA ACCTTGCCGC CTTGGGTCGT CACATTTTTG AGTTGGCAGC CCCAAAGCGG TGCCGAGGTA CCCTATCAGT TAAAGCTTGA ACGTGGTGAT TTACAGCTCA AGCTGCAACT CAATCAATGG CAAGCCTTAG GTAAACCCTC AATACTGCTC GGAGAAAAAC CTTAG
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Protein sequence | MNNLKRFTKS IFSCIALSGL LFLGGCETLP PTTDLSPITV DNATQAKAWE LQGKLAIRTP QDKLSANLYW RHSEERDELT LTTMLGTTVL TLDATPNSAH LHIDGKDFRD SNAQALLERV SGWSIPINDL PLWITGQVGG LDRVITVDSN GKTKQIQNSQ TLPPWVVTFL SWQPQSGAEV PYQLKLERGD LQLKLQLNQW QALGKPSILL GEKP
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