Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0753 |
Symbol | tolC |
ID | 4257906 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 858647 |
End bp | 859954 |
Gene Length | 1308 bp |
Protein Length | 435 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 638121364 |
Product | outer membrane channel protein |
Protein accession | YP_736810 |
Protein GI | 114046260 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000555232 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.0190145 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTTA AGATCCGTTC TCTATGCGCA GCATTAACTC TCGCGGCTTC CGCTCAAGCG GTTCAAGCAG ACGATTTACT GCAAATATAT CAACAAGCAC TGACGAGCGA CCCGCTCGTA TTACAAGCGC AAGCTCAACG TAATGCCTTG TTTGAAAAGA TCGAACAAAA CCGTGCACCA CTGTTACCAA CCATCAGTGC TAACGTGGGT TATGACAAAG CATGGAATGA TCCTAAGAAC GATACCAGTG GATTGACCGG AAGCCTAAAG CTGAATCAAG TGATCTATGA TCACAGTGCT TGGGTTGGCT TAAGTCTTGC CGAAAAAGCC GCTTCTCAAG CCGACTCAAA CTATGCTTCT GCACTGCAAA ATTTGATCAC TCGTGTAACT AAAGCCTACT TTGATGTGTT GACGGCGAAA GATAACTACG AGTTCCAAGG CGCTGAAAAA CGTGCGATTG AACGTCAACT CGAGCAAACT AAACAACGCT TTGCCGTGGG CTTAACAGCC ATCACCGACG TACATGAAGC GCAAGCTCAG TATGACTTGG CATCAGCCAC TGAAATTTTG GCTGAAAACA CGTTAGCCAA CAGCTACGAA GCCCTGCGTG AAATCACAGG TATCGATCAC AAGACCATTA ACGTGCTCGA CACCAACCGT TTCTCCGCGG TAACGCCAGC ACCTACCTCA TCGAGTGAGT GGCTAAAGAT TGCTGAAACC AACAGCGTCG ATCTGATGAC TCAACGCATC GGTAAAGATA TCGCCCAAGA GACCATAAGC CTCTACAAAG CGGGCCACAT GCCATCTCTT AGCCTAAACG CTGGCTATAA CAAAGGGTTA GAGCAAAAAA CTGGTGACGT GAATGAGCCT GATTTTGACA ATGTGAACGT TGGTGTAAAC TTAAGCATTC CTATTTTCGA AGGCTTTAAA GTCACCTCAC AGGTCAAAGA AGCGCAATTC CAATACGTGG AAGCGAGCGA GAAATTAGAG CAAACCTACC GTAGTGTGGT GAAAAACGTT CGTAACAACT ACAACAACGT AGGCGCTTCA ATCAGCTCAA TCCGTGCTTA TGAGCAATCA GTGATTTCAT CTGAAAGTGC GTTAAAGGCG ACACAAGCGG GCTTCGAAGT CGGTACTCGT ACTATTGTTG ACGTACTGAA CCGTACCCGT GACCTGTACG ACTCAAAACG TAAATTGTCG GATGCACGTT ACAGCTACAT CAACTCAATT ATTGCGTTGA AACAAGCTGC AGGCACCTTA AATGAAGACG ATGTTATCTC TATCAACAAC GGTCTAAAAG CCGAATAA
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Protein sequence | MKFKIRSLCA ALTLAASAQA VQADDLLQIY QQALTSDPLV LQAQAQRNAL FEKIEQNRAP LLPTISANVG YDKAWNDPKN DTSGLTGSLK LNQVIYDHSA WVGLSLAEKA ASQADSNYAS ALQNLITRVT KAYFDVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ YDLASATEIL AENTLANSYE ALREITGIDH KTINVLDTNR FSAVTPAPTS SSEWLKIAET NSVDLMTQRI GKDIAQETIS LYKAGHMPSL SLNAGYNKGL EQKTGDVNEP DFDNVNVGVN LSIPIFEGFK VTSQVKEAQF QYVEASEKLE QTYRSVVKNV RNNYNNVGAS ISSIRAYEQS VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSI IALKQAAGTL NEDDVISINN GLKAE
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