| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0663 |
|---|
| Symbol | |
|---|
| ID | 4256194 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 777859 |
|---|
| End bp | 781377 |
|---|
| Gene Length | 3519 bp |
|---|
| Protein Length | 1172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638121277 |
|---|
| Product | multi-sensor hybrid histidine kinase |
|---|
| Protein accession | YP_736723 |
|---|
| Protein GI | 114046173 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.564919 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGGGAATA TCTTGCTGGC GTGGTTGTCT GTTGATACTT GGTGGATCAG CGTTATATCG
ATTGCCTATT TGGCTGTGCT GTTTATTGTC GCCCAGTGGG GGCAAAATCA GGCGATAGAT
CAATGGCGTA AACGGCCTTG GGTGTACAGT TTATCCTTGG GGGTGTGTTG TACTTCGTGG
GCGTTTTACG GCACGGTAGG GCAAGCGGCG ACCACGGGTG CTTGGTTAGC GCCCATCTAC
ATAGGTTCGA TAATCTGCCT AGTGCTGGCG TGGCCTATGT TGATGCGCAC ATTGCAGATT
ATCAAAAGCC AAAACCTGAC CTCGATTGCC GACTTTATTG CCTGCCGCTT CGACCGCTCG
CCTAAAATCG CCGCCAGTGT TGCCATGGTG TCGCTCTTTG GCACTATTCC CTATATCGCG
CTGCAACTGA GGGCGATAAG CACCAGCTTC GACCTCTTAA CGGGCACCTT TCAATCTGGG
ATCAGCACGG CATTTATCGT TACTATCGTG TTGATTATCT TTAGTATCTT ATTCGGTACA
CGGCAGCTTT CGGCCAGTAA ACAAAATCAA GGCTTGGTAT TAGCGATTGC CTTTAGCTCA
ATCGTAAAGC TGTTTGCGCT CACCACGGTT GGGTTGTTCG CTACTTTCTA TGTGTTTGAT
GGTTTCAGTG ATTTGCTCGC TCGAGGTCAG CATTTACCGC CGAGTTCTGA GGGTAATTCA
CTCTATTTTG TGCTGTCACA AATTCTGCTG GGCGCCATTA CCATCTATGC GCTGCCTCAG
GAATTCCACA TGATGATGAT TGAAAATCAT CATGCCAAAG AGTTAAAAGC CGCCCGTTGG
ATGGTGCCAC TGTATCTGCT GCTGATTAAT GCCTTTGTGT TGCCTATCGC GCTTGCGGGG
CAGATTAGCT TTCCCGGCGG CAGTGTCGAT GCCGACACTT ACGTGCTGAC CTTACCGCTG
TTTTATCAGC AGGCTTGGCT TGGGGTCTTG GTGTATATTG GCGGCCTTGC GGCGGCAACG
GCCATGGTCA TTGTGGCGGC GATTGTACTC AGCACCATGA TTTCGACCGA GATTTTGACT
CCGTTGCTGC TGAGATTACC GAAGTTTAGC TCGCAGCAGA CGCCGCAGCT CGCGGGGATA
TTGCTCAATT TACGGCGGAT ATCGATAGCG GCGATTCTGC TATCGGCCTT TGCCTTCGAG
CGTTATATCG ACCAGCAGAA TCACTTGGCC AGCATTGGCT TGTTATCCTT TGTGCTGCTG
TCGCAGTTTT TCCCCGCCGC CGTGGGTGCG CTTTATTGGC GCCGCGCCAC CACCCAAGGT
GCCTTTTGGG GCATGTTGAT GGGCAGTTTA GTCTGGCTCT ATACCTTGTT GCTGCCCGCG
ACCTTCCCCG ATGCACTCTG GGTCACTCAA GGCTTGTTGA ATATTCCATG GTTAACTCCG
ACCGCGCTAT TTGGTTTGAG TGGGCTGGAT AATATTAGCC ACGGCCTACT GTATAGTTTG
CTCGCGAACG TCGGTTGTTT TGTGCTGATT TCGTTGCTGA AAGAGCAGAG TGTGGGGGAA
GTGCTTCAAG CCGATGTGTT TGTTAACCGT AAACAGGTGG CGCTGGAAAG GCACCTCTCG
GTTGAGGATC TGGCGAGCCT ATTACACCGC TTTATCAATA AGGAAGAAGC CGATGCCCTG
CAGGCTAGGG CGAAGGTACT TGGTTCTGAA TTGCAATTAG CCACACGGCG CGAGGAGCTG
GTGGATTACA CCCGCCTTAA GTTGTCGGGT GTGCTTGGGT CTGCCTCGAC GCGGATGGTG
ATGAATGCCG CCTCACGCTC GCAGCAAGTA CCGCTGGAGG ATGTGGTCAG CATAGTCGAT
GAGGCCAACC AGATCTTCGA GTTTAACCGC GAGCTACTGC AATCTGGGGT GGAGAATATA
GAGCAGGGGA TCAGCGTGGT CGATGCCGAT ATGCGCCTGG TTGCATGGAA CAAACGCTAT
ATTGAATTGC TTGATTATCC TAAAGATTAC GTCAAAGCAG GCATACCGAT AGAGACGCTG
CTGAGGTTTA ATATCGAGCG CGGCATTATT GTGGGCGATG AGGCCCATGA GCTGGTGGAA
AAACGCCTCG CCCATATGCG TAGTGGCAGC CCACACCATT TCCAGCGCAC TATGCTCGAT
GGCAAGGTGC TGGAGATCCG TGGTCAAGCC ATGCCGGGTG GCGGCTTTGT CAGTACCTTT
ACCGACATTA CCGCCCATAT TCAGGCCGAA AAAGCCCTGC AACTGGCTAA CGAAACCCTC
GAAAAGCGGG TCGAAAGCCG CACAAGGGAA CTCGCGAAAG CCAAGGCCGA AGCCGAGGCG
GCCAATAGCA GTAAGACACG CTTCTTAGCG GCGGCGAGCC ACGATTTAAT GCAGCCCTTT
AACGCGCTCA CTCTGTTTAC CGAGATGCTT AAACAGCGGG TGACGTCGAC CGAACTCAAG
GATCTCGCCA CCCATATCGA AGCCTCCTTA AATGTGGTGG AGAGTCTGCT ATCCGATCTG
GTGGAAATCT CCCGCCTCGA TGGCGGCAGC CTTAAAACCG AACAGAGCCA GTTTGCACTC
GACGATGTAC TCTCGACCTT AGTGAATGAA TTTAAAGCTT TATCCGCCGA GCAGGGCATC
GATTTTTCCT ATCAGTTTTC CTCCTGCCTA GTGCAGAGCG ACCAACGTTT GCTGCGACGA
ATTATTCAAA ACTTCCTCTC CAATGCGTTC CATTATTCCC CTGCGGGGGC GCTTAATCGG
CAAACGCCGG TATCAATGAA TGCCAGCGCG GCCTTGGCTA AGCCAGCGGA ACCCGCCTTT
GTACCTAAGG TATTACTGGG CGTGAGGCGG CTCGAACACA GCCTGCTTAT CCAAGTGTGG
GACAATGGCC CCGGCATTCC TCAAGATAAG CAGCAGGCGA TTTTTGGTGA GTTTGAGCGC
CTCGAGCAAA CGCGGGAGAT CCCTGGGCTT GGACTTGGGC TCGCCATTTG CGACCGCATC
GCTAAGTTAC TCGGGCTTAA GATTGCCTTG CACTCCGAGG TGGGCAAAGG CACTTGCTTT
AGTGTCGAAG TGCCGCGAGT CTCTGCCCTG AAAAAGCCTT CAAATGTCGT TAAACTTCGC
AGTGAGGAAG AGTCTGTTAG CGATAGCTTT AATATCAGCG TGTTAGTCAT AGATAACGAT
GAGTTAATGC TAAAGGCCAT CTCCTCATTA CTGTTAGGCT GGGGCTGCCA TGTACTCACT
GCACGGGATA AAGCCTGCGC CGAGCTGCAA CTGGCGCAGC AGGTGTTGCC TAAACTTATC
ATTGCCGATT ACCACTTGGA TGATGACCAA AACGGTGTCG ATCTGGTGCA AAGCTTACTC
ACCCATCCTG TGTTTAGCCG TCAGCGTCCG ACCTGCATTA TCTGCTCGGC AGATCCGTCT
GAATCTGTGC GGCAACACAC CAGCAGCGCA CAGTTTAGTT TTGTACGTAA ACCCGTTAAA
GCCACCGCCT TAAAGCGACT GATTAAGCAA TTGTCTTAA
|
|---|
| Protein sequence | MGNILLAWLS VDTWWISVIS IAYLAVLFIV AQWGQNQAID QWRKRPWVYS LSLGVCCTSW
AFYGTVGQAA TTGAWLAPIY IGSIICLVLA WPMLMRTLQI IKSQNLTSIA DFIACRFDRS
PKIAASVAMV SLFGTIPYIA LQLRAISTSF DLLTGTFQSG ISTAFIVTIV LIIFSILFGT
RQLSASKQNQ GLVLAIAFSS IVKLFALTTV GLFATFYVFD GFSDLLARGQ HLPPSSEGNS
LYFVLSQILL GAITIYALPQ EFHMMMIENH HAKELKAARW MVPLYLLLIN AFVLPIALAG
QISFPGGSVD ADTYVLTLPL FYQQAWLGVL VYIGGLAAAT AMVIVAAIVL STMISTEILT
PLLLRLPKFS SQQTPQLAGI LLNLRRISIA AILLSAFAFE RYIDQQNHLA SIGLLSFVLL
SQFFPAAVGA LYWRRATTQG AFWGMLMGSL VWLYTLLLPA TFPDALWVTQ GLLNIPWLTP
TALFGLSGLD NISHGLLYSL LANVGCFVLI SLLKEQSVGE VLQADVFVNR KQVALERHLS
VEDLASLLHR FINKEEADAL QARAKVLGSE LQLATRREEL VDYTRLKLSG VLGSASTRMV
MNAASRSQQV PLEDVVSIVD EANQIFEFNR ELLQSGVENI EQGISVVDAD MRLVAWNKRY
IELLDYPKDY VKAGIPIETL LRFNIERGII VGDEAHELVE KRLAHMRSGS PHHFQRTMLD
GKVLEIRGQA MPGGGFVSTF TDITAHIQAE KALQLANETL EKRVESRTRE LAKAKAEAEA
ANSSKTRFLA AASHDLMQPF NALTLFTEML KQRVTSTELK DLATHIEASL NVVESLLSDL
VEISRLDGGS LKTEQSQFAL DDVLSTLVNE FKALSAEQGI DFSYQFSSCL VQSDQRLLRR
IIQNFLSNAF HYSPAGALNR QTPVSMNASA ALAKPAEPAF VPKVLLGVRR LEHSLLIQVW
DNGPGIPQDK QQAIFGEFER LEQTREIPGL GLGLAICDRI AKLLGLKIAL HSEVGKGTCF
SVEVPRVSAL KKPSNVVKLR SEEESVSDSF NISVLVIDND ELMLKAISSL LLGWGCHVLT
ARDKACAELQ LAQQVLPKLI IADYHLDDDQ NGVDLVQSLL THPVFSRQRP TCIICSADPS
ESVRQHTSSA QFSFVRKPVK ATALKRLIKQ LS
|
|---|
| |