Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0469 |
Symbol | |
ID | 4256685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 533715 |
End bp | 535475 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638121083 |
Product | type II secretion system protein E |
Protein accession | YP_736529 |
Protein GI | 114045979 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCCA GATTAAAGAT GCGTTTGGGC GATCTGTTAG TTCAAGAATC GATTATTACC GAAGAGCAGC TACAACAAGC CTTGGGCGAG CAGCGCAAGA CAGGGCATAA GCTCGGCCGC ACCCTGATTG AGCTGCGCTC TATTACCGAA ACCCAACTGC TGCAATTTTT GTCGCAGCAG CTCAATCTGC CGCTGCTGGA TATCAGCAAA CGCCCCATCC CCGCCGAAGT GGTGAGCCTT ATCCCCGAGG TGCAAGCGCG GCGTTTTCGC GCCCTCGCGG TGGAAGATCG GGGGGATACG GTATTAGTGG CCATGAGCGA CCCGGCGGAC TTGCAGGCGC TCGACCATTT AGAAATTTTA ATCGCACCGA AAAAGCTCAG TGTTGCGGTG GCCCCCGAGC AGCAATTACT ACAAGCCTTC GATAACCTGT ATCGTCGCAC CGACCAAATC GCGCAAATCG CCGGTAAGCT CGAAGAGGAA TATGCCGCAG ATCAAATGTT TGATCTGGCG AGCCTGACCT CAAGCGATAG CGATAATGAA ACCACAGTTG TTAAGCTGCT GCAGTCGATT TTTGAAGATG CGGTGCAAAT GCGTGCCTCG GATATTCATA TTGAGCCTGG CGAAAAAGCC CTGCGGATCC GCCAACGTAT CGATGGCCAG TTACACGAGA CCATTCTAAA TGAAGTGAAT ATCGCGGCGG CCTTAGTCTT GCGGCTTAAG CTTATGGCTG GGCTAGATAT TTCTGAAAAA CGTCTGCCGC AAGACGGTCG TTTCCATATG GAAATTAAGG GCCACAAGAT TGACGTGCGT ATGTCGACTA TGCCGATTTA CCACGGTGAA TCTGTGGTGA TGCGTCTACT CGACCAATCC GCAGGCTTAT TGACCTTAAA TGAGACAGGG ATGCCGCCGC ATATTTTGGC GCGTATCCGT AAGCAGATTA AACGTCCCCA CGGCATGTTG CTGGTGACTG GGCCTACGGG TAGCGGTAAA ACCACCACCT TGTATGGCAT CCTAAGTGAG CTCAATACTG CGGATCGCAA GATTATCACG GTAGAAGATC CGGTCGAATA CCAATTGCCA AGGATCAACC AAGTTCAAGT TAACCATAAG ATTGGACTCG ATTTTTCGAA CGTGCTGCGC ACTACTTTGC GTCAAGACCC GGACATTATC ATGGTCGGTG AGATGCGTGA CCAAGAAACG GTGGAGATTG GTCTTAGGGG CGCACTTACG GGTCACTTTG TGTTGTCCAC ATTGCACACT AACGATGCGG TGACCAGCGC GCTACGTTTG CTCGATATGG GCGCGGCCAG TTACCTAGTG GCGAGTGCGC TAAGGGTGAT TATCGCCCAG CGCCTAGTGC GCCGCGTGTG CCATAACTGC GGGGTGGAAT ATCAACCTAC GGCGCAGGAA AAAGCCTGGC TGAATAGTGT GAGTCGTCAG GATTTTTCAT CGGCTAAGTT CCGCATTGGT ACTGGCTGCC AAAGCTGTAA CGGCAGTGGT TATCGCGGCC GTATCGGTAT TTTTGAGATC CTTGAATTGG ATGAAAAGAT GATCGATGCG ATGCGTACTG GTAATCCACA GGATTTTGCC CGTGCAGCCC TGCAAAGCCC TAACTTTACC CCGCTCGCCG AGTCGGCACT GCAATATTTG AGCGAAGGCA TGACGACGAT TGAAGAGGTG GCTAAGCTTG TTGAGGATGT GAGTGAGTCA CAGGTGCCAC TCTCGCGGGA TATTATCAGT CAGCAAGGCG TTGAGGCGTA A
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Protein sequence | MKPRLKMRLG DLLVQESIIT EEQLQQALGE QRKTGHKLGR TLIELRSITE TQLLQFLSQQ LNLPLLDISK RPIPAEVVSL IPEVQARRFR ALAVEDRGDT VLVAMSDPAD LQALDHLEIL IAPKKLSVAV APEQQLLQAF DNLYRRTDQI AQIAGKLEEE YAADQMFDLA SLTSSDSDNE TTVVKLLQSI FEDAVQMRAS DIHIEPGEKA LRIRQRIDGQ LHETILNEVN IAAALVLRLK LMAGLDISEK RLPQDGRFHM EIKGHKIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG MPPHILARIR KQIKRPHGML LVTGPTGSGK TTTLYGILSE LNTADRKIIT VEDPVEYQLP RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCHNC GVEYQPTAQE KAWLNSVSRQ DFSSAKFRIG TGCQSCNGSG YRGRIGIFEI LELDEKMIDA MRTGNPQDFA RAALQSPNFT PLAESALQYL SEGMTTIEEV AKLVEDVSES QVPLSRDIIS QQGVEA
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