| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0466 |
|---|
| Symbol | |
|---|
| ID | 4256682 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 529775 |
|---|
| End bp | 531460 |
|---|
| Gene Length | 1686 bp |
|---|
| Protein Length | 561 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638121080 |
|---|
| Product | pilus (MSHA type) biogenesis protein MshL |
|---|
| Protein accession | YP_736526 |
|---|
| Protein GI | 114045976 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.142109 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGCCA TTAAATATAT TACGCCTCTA CTCTCACTTT GCCTTATGGC CTGCCAAACC
ACGGATAGAC CGCAGCCCGT TGCTTCAAAA GAAGCGCTGG CTACCTCAAT GCAAACCGCG
AGTCAGCCAA CGCCTCCACC ACCGGCCACT ATGCCCGATG CGGTGCAGCG TGAGCTGAAT
GCCAATGCCA TGATGGGTGG ATTAACTCCG CCAATGGAGA CGGAGCGTCG TATCGATGTG
TCTGCCCATG ATGTGGATGC GAGGGTGTTT TTCCCAAGCC TTGTGCAGGG CACTCCCTTT
AGCGTGGCTG TGCATCCCGA TGTGCAGGGC ACGATTTCAT TGTCACTCAA AGGTGTGACA
TTGAGTGAAG CCATTCAAGT GGTGGAAGAT ATTTATGGTT ATGAGGTGAG CCGTGAAGGG
CGCATCCTGC GCGTGTTCCC TGCGGGTATG CGAACTGAGA CTTTCCCTTT AAATTACTTA
TACATGGAGC GTGATGGTCT ATCGTTGACC TCTGTGAGTT CTGGCCGGAT CTCCGACAAT
AACAACTCGA ATAACAATAA CTCCAATAAC AACAATTCGA ACAACGGCAA TTTTGGCAAT
AACAGCAACA ATAACAATTC CAACAACGGT AATTACGGCA ACAATAACAG CAGCGATAGC
ACTAACGGCA CCTTTATTCG CTCGCGCACT AAGACCGATT TTTGGGGCGA ATTGAAAGAA
ACCTTGAGTG CCATTATTGG TGACACTGGT GGTGGTCGTC AGGTGGTGGT GACGCCACAG
GCGGGATTAG TAACTATTCG TGCCTATCCT AATGAGTTAC GTCAGGTGCG TGCCTTTTTA
AATTCCGCCG AGAGCCATCT GCAACGCCAA GTGATCCTCG AAGCGAAGAT CCTCGAAGTC
ACTTTGTCTG ATGGTTATCA GCAAGGTATT CAATGGGATA ACGTATTGGG CCACGTAGGT
AATACCAATA TCAATTTTGG TACCTCTGCG GGCGCAGGCT TGAGCGATAA AATCACCGCT
TCCCTCGGAG GCGTGACGTC CTTAAGCATT AAAGGCTCAG ATTTCAATAC CATGATTAGC
CTGCTCGACA CCCAAGGCGA TGTGGACGTG TTATCTAGCC CAAGGGTGAC GGCATCGAAC
AACCAAAAGG CGGTGATTAA GGTCGGTACC GACGAGTATT TTGTGACCGA CGTGTCATCG
ACCACAGTGG CGGGCACCAC GCCTGTGACC ACGCCTCAGG TAGAGTTAAC GCCGTTCTTC
TCGGGCATCG CATTGGATGT GACGCCACAA ATCGACAAGG ACGGTAATGT GCTGCTCCAT
GTGCATCCTT CCGTTATCGA TGTTAAAGAA CAAACCAAGG ACATTAAGGT CAGCAGCGAA
TCCTTAGAAC TGCCGCTAGC ACAGAGCGAG ATCCGCGAAT CCGATACCGT TATCCGCGCG
GCTTCTGGCG ATGTGGTGGT GATCGGTGGT TTGATGAAGA GCGAAAATAC CGAAGTGGTC
TCTCAGGTGC CGCTGCTCGG TGATATTCCA CTCGTCGGCG AATTATTTAA AAACCGCAGC
AAGCAGAAGA AGAAAACCGA GTTGATTATC ATGTTAAAGC CGACCGTAGT AGGCAATGAT
ACTTGGAAAA ACGAGTTAGA GCGTTCTAAG ACCTTACTCG ACCGTTGGTA TCCAGAAAAT
AAGTAA
|
|---|
| Protein sequence | MTAIKYITPL LSLCLMACQT TDRPQPVASK EALATSMQTA SQPTPPPPAT MPDAVQRELN
ANAMMGGLTP PMETERRIDV SAHDVDARVF FPSLVQGTPF SVAVHPDVQG TISLSLKGVT
LSEAIQVVED IYGYEVSREG RILRVFPAGM RTETFPLNYL YMERDGLSLT SVSSGRISDN
NNSNNNNSNN NNSNNGNFGN NSNNNNSNNG NYGNNNSSDS TNGTFIRSRT KTDFWGELKE
TLSAIIGDTG GGRQVVVTPQ AGLVTIRAYP NELRQVRAFL NSAESHLQRQ VILEAKILEV
TLSDGYQQGI QWDNVLGHVG NTNINFGTSA GAGLSDKITA SLGGVTSLSI KGSDFNTMIS
LLDTQGDVDV LSSPRVTASN NQKAVIKVGT DEYFVTDVSS TTVAGTTPVT TPQVELTPFF
SGIALDVTPQ IDKDGNVLLH VHPSVIDVKE QTKDIKVSSE SLELPLAQSE IRESDTVIRA
ASGDVVVIGG LMKSENTEVV SQVPLLGDIP LVGELFKNRS KQKKKTELII MLKPTVVGND
TWKNELERSK TLLDRWYPEN K
|
|---|
| |