| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0311 |
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| Symbol | |
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| ID | 4258308 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 338311 |
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| End bp | 342825 |
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| Gene Length | 4515 bp |
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| Protein Length | 1504 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638120917 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_736372 |
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| Protein GI | 114045822 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATAGGGG TAACTTTGAG CCATCCAATC CTTAAATTCG TCTTAGTCGT GCTCTGTCTT
ATTAGCTTAG GGGCTCCGCG AACAGGCTTG GCACTCCCCT TAAATACGGC TAACACACAG
CTGAAATTTG AACATATCCG CAGCGAAGAA GGCTTAAATC AAAATACCAT TACCAGCCTG
TTTATGGACA GCGCAGGCAT GCTTTGGATT GGCACTCAAG ATGGGCTACA CAGTTATAAC
GGTTATAACT TCAATCTCTT TATCCACTCG CCGAACGATC CTAAGAGCAT TTCCGAAAGC
TATGTATCAG ACATTATTCA AGATGCACAA GGCTATATCT GGGTCGGCAC TTTTAGCCAA
GGGATCAATC GCTTAGATTT AAAAACCGGC ACCTTCGAGC GCTTCGGTGT CGAGCAAGGC
CTGACCGACC CTAGAGTCAC TAAACTCAAT ATTGTTGGCA ATACCCTCTG GATTGGCACT
CAAGGCGGAT TATTTTCACT CTCAACCCGC ACCAACAGAG TCACTCAAGT GTCATTGGGG
ACGAGTATCG AACCCCAAAT CACTAGCCTA GCCAATGTGG ATAACACCTA TTTATTGGCA
GGCACTAAGG CCAGTGGCAC CTTTGCCGTG ACGGCCAATT CCATCACTCG ACTCAATGTA
CCGCAGGAGC TGGTTGCCTA TCAGATTAAG GCCAATTCAA CCCGCGCCAT TACCTTAGCG
CTCGGTAATC AGCTCTGGCA CTATGATCTA GTGTCACAAC AGGGACAAGT GCTATGGCAA
ACAGAAAAAA ACGTCCCTTA TATCAAAGAT TTTATCCAAA CACCCCAAGG TCAGTTTTGG
GTAGTTGGAC CCGATGCGGG TTTGATCCAG TTACAGAGGG CAGGAGAACA ATTTGTCGCG
ACCTATCATA GGTACGATAC CAAGCGTTCG AATAGCATCA GCGAAAATAA CATCCTATGT
CTTTTAGAGG ATCCATTCGG CAATCTATGG ATTGGCGCGA GTTATTCGGG GCTGAATAAG
ATCAATACTC GCCGGCAATA TTTTCAGCAT TTATTTGAAT ACTCAGCAAA ACTACCCCTG
CAAAGTAATA ATATCCGCAC CATTTACCGC AGCCAAGATA ACGCACTATG GATAGGCACA
GAAGGCGCAG GGCTGAAACG ACTCGGCTTC AATAGCACTC AATACGAGCA CTACAACTCC
CTTTTTGCCA AGGCCCTAGG TCTAGAGGCG CACAACTTAA ACTTGATCCT ACGCTCAATT
ATCCAAGACC AGCAAGGCAC GCTCTGGTTT GCCAGTAACT ATGGATTAGG CCGCCTAAGC
ACTGGCGGTG ATTTTAGCCT ACTAAAGGTA TCTGATAATC AAGATACCTC CACAGAAGCA
AACTATATCC GTAGCTTAGA ACTAGATGAC CAGAACAGGC TGTGGGTCGC GACATCCCAT
GCCTTGTACC GAAAAGCGCC AGAGGGCAAT GAATTTACGC CGGTTTCAAT CGCTCACATT
GAAAATTTCT ACCCCATGCA AAATCAGCTA CTCACGTTAA GAGCAGACAA GCATGATCTG
TGGATTGGCT CGCTCAATGG CTTAGTGAAA CTGGATATGC AAACGGGGAA AGGAGAGGTG
TTCTACCATG ATCCCCATGA CAAAAATACC ATTATAAACA ATCGCATTAG AGACATTTTA
GTCGCCAGCA ATGGCGATAT CTGGTTTGCC ACCCATGGCG GAATCAGTCG ATTATCGGCC
CAAGCCACGA CACCGATTTT CAGTGATTAT ACCCGCGAAC AAGGCCTGCC CAGTGACACT
ATCTATGCTC TGCTTGAGGA TGCCGAACAT CATATTTGGT TTAGCAGCAA TGCGGGAATC
GGCAAGTTAA ATCCCGTCAG CGGCAAAGTC ATCAATTTTA ATGAACAGGA AGGCCTGCAG
GCGCTGGAGT TTAACGGTGG CGTAAAACTT AAAGACAGTG ATGGCGACCT GTGGTTTGGC
GGGATAAACG GGATCAACCG CTTTAATCCT AAAACATTGC CAGACAAGAG GAGTGAAGCC
AAGGTGGCAC TCACCGCCTA TAAGATTGCG GGTAAAAAAC ATACTATCCT CGACCTCAGC
CATCCACCCA AAATCGTGAT GAACTATACC GACCAATTGG TCAGCTTTGA GGTCACCTCA
CTGGATTTTA GCTACACGGG CAAAAATCGC TTTAGCTATT TCCTCGAAGG CTTTGATAAC
CAATGGCACG ATTTGCCCAC GGGAAATGAA ATCACCTTTA CCAATATAGA ACCAGGCAAC
TACGTGTTGC ATGTACGTCA CTCCATTGAG CACAACAACG AAGGTAACTA TGCGCTGCTG
GTCGATTTAA GCATCAAGGC CCCCTTATAC CGCACTCAAT TTGCCTATGT GCTTTATGGA
CTACTAACAT TAGCCTTGTT GGTCGTTGTT TATCGTTGGC GTAAGCAAAA ACGCCAACAG
CAACAAGAGT TTGATACCAG CATCCGCGCC TCCGAAGAGC GGCTAAAATT GGCGCTCTGG
GCTTCGGGCG ATGGTATGTG GGATTGGAAT ATCCAAGAAC AGCAGGTCTA TCGTACTCAT
ACGGATATTC CGGTTCCCCA ATGGAATAGC CACTCTCTGT TACATGACAA TGCTCACCCT
GAAGATAGGG AGCGGTTTAA ACAAGTCTTG ACCGAGCACC TGCTGGGACG CTCCCCTTTC
TTTGAAGTGG AATATCGTAT CGAGCATTCA CCGGGCAACT GGCTATGGAT CCTTGAGCGC
GGCAAAGTGG TCGAAACCAA TGCACAGGCT CAGCCCGTTC GAATGACGGG CACCACCCGC
AATATCACCT CGCGCAAGCT GATCGAGAAT GAGCTAGTGC TCTCCTCTCA AGTACTTAAC
AGCATGAACG AGGCCGTTGT GGTGGCAGGT CTAGACTACC GGATCCGCTC GGTAAACCCC
GCCTTTAGCG CCATTACCGG ATATTCGGAG CGGCAAATCA GCGATAAGTA TTTAATTCAT
TTAGCCTACA GCCGACAACA GCGAGATCTC TTCAATGGCA TTGAACAGCA ACTGCTGCGT
CATAAACATT GGGCGGGTGA AATTTGGATC CGCAACAAGG CGCGCAAGGC GATTCTGGTG
TGGCTCGAGA TCAACCAAGT TATCGATGTG AAAGGGGAAA CCAGTCACTT TGTGGCGGTG
TTTACCGATA TTACAGAGCG TAAAAAGGCC GAAGAGGATC TCCGCTTCCT CGCCAGCTTC
GACACCTTGA CTGGGCTGCC GAATCGCACC TTGTTCCAGG ACAGGCTCAA CCACGCCATA
TCTCAAGCCC ATAGGTCGAA TAATATCGTC GCCCTGCTGT TTTTAGACCT CGACCGCTTT
AAGCATATCA ATGATTCCAT GGGGCACCAT ATTGGCGATC TGCTGCTCAA AGCCGTGGCC
CACAGGCTGC AAAATGCTGT TCGTGAAGGG GATACGGTTG CCCGTTTAGG CGGCGATGAA
TTTACCATTA TTTTGGAAGG CGTGGCGAAA ACCAAGGCGG CGACGCTGAT CTCCGAGAAA
GTGCTCAAAG CCTTTCAGGC GCCCTTCTTA CTCGATGATA AGTCCCTGAC TATCTCAACT
TCGATTGGTA TCAGCCTCTA TCCCAATGAT GCGGAAGATG TGGATTCGCT GATTAAGTTT
GCCGATACCG CCATGTACCA CGCCAAGGCG CTCGGTCGGA ATAACTTTCA GTTTTACACC
AATAAACTCA ATGAGATGGC AACGCGCCAT GTGCAACTCG AGGCAGGGCT TAAACAGGCC
ATCTCACGCA ACGAGTTAAG CTTGGTGTAT CAACCCAAGT TTTGTTTACG CAATGGCTCA
CTCACTGGAC TTGAGGCGCT GCTGCGTTGG CATCATAGTG AACTAGGCCC TATCTCACCC
GCCGAGTTTA TTCCACTGGC GGAGGAAACC GGCATCATTA ACCAAATTGG CCATTGGGTG
ATCAACCACG CTTGCCAGCA ACTCGCAGAG TGGAATGAGC TGGGCTTGGG CAATATCAGC
ATGGCGGTTA ACCTTTCGGC AAGGCAGTTG AAGGCCGATA TTATCTCGAC CATCGAAGTG
GCTCTCGCGG TATCTGGCCT ACCCGCCAAA GTGCTCGAGC TGGAATTAAC CGAGTCGATG
ATTATGGCGA ACCCGCAGGA GTCGGTAAAC ATCCTCTCTA AACTCAAAGC ATTAGGCTTA
ACCATCGCAG TGGATGATTT CGGTACTGGT TACTCGAGCT TGAGTTATCT TAAGCGTTTT
CCAATCGACA CCTTAAAAAT TGACCGTGAG TTTGTGCGCG ACATAACTAA CGACCCCGAC
GATGCGGCCA TTACAAGCGC GATTATCGCC CTCGCCCACA GCCTAGAGTT AAATGTGGTG
GCGGAAGGGG TAGAAACCCA AGAACAGCTG AACTTCTTAG CGCTACAAGG CTGCGATCAA
GTACAGGGCT TCCTGCTGAG TAAGCCACTC AGCGCCCAGG ATTGCTTAGC GCTGTTGCAA
CAACGGATAA AATAA
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| Protein sequence | MIGVTLSHPI LKFVLVVLCL ISLGAPRTGL ALPLNTANTQ LKFEHIRSEE GLNQNTITSL
FMDSAGMLWI GTQDGLHSYN GYNFNLFIHS PNDPKSISES YVSDIIQDAQ GYIWVGTFSQ
GINRLDLKTG TFERFGVEQG LTDPRVTKLN IVGNTLWIGT QGGLFSLSTR TNRVTQVSLG
TSIEPQITSL ANVDNTYLLA GTKASGTFAV TANSITRLNV PQELVAYQIK ANSTRAITLA
LGNQLWHYDL VSQQGQVLWQ TEKNVPYIKD FIQTPQGQFW VVGPDAGLIQ LQRAGEQFVA
TYHRYDTKRS NSISENNILC LLEDPFGNLW IGASYSGLNK INTRRQYFQH LFEYSAKLPL
QSNNIRTIYR SQDNALWIGT EGAGLKRLGF NSTQYEHYNS LFAKALGLEA HNLNLILRSI
IQDQQGTLWF ASNYGLGRLS TGGDFSLLKV SDNQDTSTEA NYIRSLELDD QNRLWVATSH
ALYRKAPEGN EFTPVSIAHI ENFYPMQNQL LTLRADKHDL WIGSLNGLVK LDMQTGKGEV
FYHDPHDKNT IINNRIRDIL VASNGDIWFA THGGISRLSA QATTPIFSDY TREQGLPSDT
IYALLEDAEH HIWFSSNAGI GKLNPVSGKV INFNEQEGLQ ALEFNGGVKL KDSDGDLWFG
GINGINRFNP KTLPDKRSEA KVALTAYKIA GKKHTILDLS HPPKIVMNYT DQLVSFEVTS
LDFSYTGKNR FSYFLEGFDN QWHDLPTGNE ITFTNIEPGN YVLHVRHSIE HNNEGNYALL
VDLSIKAPLY RTQFAYVLYG LLTLALLVVV YRWRKQKRQQ QQEFDTSIRA SEERLKLALW
ASGDGMWDWN IQEQQVYRTH TDIPVPQWNS HSLLHDNAHP EDRERFKQVL TEHLLGRSPF
FEVEYRIEHS PGNWLWILER GKVVETNAQA QPVRMTGTTR NITSRKLIEN ELVLSSQVLN
SMNEAVVVAG LDYRIRSVNP AFSAITGYSE RQISDKYLIH LAYSRQQRDL FNGIEQQLLR
HKHWAGEIWI RNKARKAILV WLEINQVIDV KGETSHFVAV FTDITERKKA EEDLRFLASF
DTLTGLPNRT LFQDRLNHAI SQAHRSNNIV ALLFLDLDRF KHINDSMGHH IGDLLLKAVA
HRLQNAVREG DTVARLGGDE FTIILEGVAK TKAATLISEK VLKAFQAPFL LDDKSLTIST
SIGISLYPND AEDVDSLIKF ADTAMYHAKA LGRNNFQFYT NKLNEMATRH VQLEAGLKQA
ISRNELSLVY QPKFCLRNGS LTGLEALLRW HHSELGPISP AEFIPLAEET GIINQIGHWV
INHACQQLAE WNELGLGNIS MAVNLSARQL KADIISTIEV ALAVSGLPAK VLELELTESM
IMANPQESVN ILSKLKALGL TIAVDDFGTG YSSLSYLKRF PIDTLKIDRE FVRDITNDPD
DAAITSAIIA LAHSLELNVV AEGVETQEQL NFLALQGCDQ VQGFLLSKPL SAQDCLALLQ
QRIK
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