Gene Shewmr7_0246 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr7_0246 
Symbol 
ID4256076 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-7 
KingdomBacteria 
Replicon accessionNC_008322 
Strand
Start bp270687 
End bp272741 
Gene Length2055 bp 
Protein Length684 aa 
Translation table11 
GC content44% 
IMG OID638120853 
Producttype IV pilus secretin PilQ 
Protein accessionYP_736308 
Protein GI114045758 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4796] Type II secretory pathway, component HofQ 
TIGRFAM ID[TIGR02515] type IV pilus secretin (or competence protein) PilQ 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0240868 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.818233 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATCTT CTGCCGCGAT AAAAATCCCG TTATCGTTTT TATCTTCAGG CTTAGCTAAG 
TCTGTTATTG GGATCGCATT AGTATTTGGA TTTTTGCCAT CGAGTTTTGC GGCAAATAGG
TTGATGGATG TCAAATACCA TGCTTTGGTC GATCATCAAT TAGAAGTCGA ATTAGTGTTT
GAGGACGCTA TTAATGCCCC CCAAATTGAC TCTAATGCTG CACCTGCCCA GTTGGTATTA
ACCTTCGATG ACAGTATTTC GGGTCTTTCT AAAGATCGTC TCCCGATCAA TCAAGTCGGC
GTGAAGGATA TAGTGACGAC CCAGCAAGAC GCCAATTTAA TGGTGACCTT GGGGTTATCT
AAGGTTAAAC CCTATCAAGG TAGCGTAGTT GGTAATTCCT ACCGTCTAAC GATTAACGAT
GAAGTTGCAG GCAGCCAAGC CGGTAATAAT CCTTTCGTTA ATAGCGTTAA AAATATCGAT
TTTCGTCGCA ACGCTAATGG CGGTGGTGAT TTATTAGTCT ATTTAAATAA TCGCTCGGTT
GCTGCAAACG TTGAACAGAT TGGCGCCAAG CTTGAAGTTC AGCTTTACAA CACAGATATT
AACAGCGACT TGTTATATGT GATGGATGTG CAGGATTTCT CCACACCCGT AAAACATTTT
GAAACCTTTA AGGACGATTT AACGACCCGG ATTTTAGTCG ATGTCTCGGG GAATTATGAG
TTCAATTACA AACAGGAAGA CAATCTCTTT AGGCTCTCAA TCAACAAGGT AGAGCGTGCC
GCGGCGACAA AAGAGGTAAA GAAATATAAC GGTAAGACCC TTTCGTTAAA TTTCCAGAAT
ATTTCAGTAC GTACCGTATT GCAGATTATT GCCGATTATA ACAACTTCAA CTTAGTCACG
AGCGACACAG TTGAAGGTGA TATCACCTTA AGACTCGATG ATGTGCCTTG GGACCAAGCA
TTGGATTTGA TTCTGCAAAC CAAAGGGCTC GATAAGCGTA TCGAAGGCAA TATTCTTATG
GTGGCGCCAA GTGAAGAGCT GGCGATTCGT GAAAGTCAAA ACCTTAAAAA TAAACAAGAA
GTTAAAGAGC TGGCACCACT CTATTCTGAA TATCTTCAGA TTAACTATGC CAAGGCGACC
GACATAGCAG AGCTATTAAA AGGTGCTGAT TCGAGTTTAT TGTCTCCTCG CGGTTCAGTG
GCTGTCGATG AGCGTACCAA CACAGTGTTA GTGAAAGATA CCGCTGAAAT CATCGAAAAT
ATTCACCGTT TGGTTGAAGT GCTCGACATT CCCATCCGCC AAGTGTTGAT TGAATCGCGT
ATGGTGACGG TAAAAGACGA CGTGTCCGAA GATTTAGGTA TTCGTTGGGG GGTAACAGAC
CAGCAGGGTA GTAAAGGCAC CTCTGGAACG CTTGAGGGAG CCGGAAGTAT TGCTACTGGT
ACAGTGCCAT CCCTAGATAA CCGTTTGAAC GTGAATTTAC CTGCTGCGGT AACCAACCCT
ACAAGTATTG CGTTCCATGT GGCAAAGCTT GCCGATGGCA CTATCTTAGA TTTGGAGTTG
AGTGCACTGG AGCAAGAAAA CAAAGGTGAA ATTATCGCTA GCCCTCGCAT TACCACCTCT
AACCAAAAGG CGGCGTATAT CGAGCAGGGT GTGGAAATCC CTTATGTGCA ATCCACTTCC
AGTGGTGCAA CTTCGGTGAC CTTTAAGAAG GCTGTTTTAT CATTGCGTGT TACACCACAA
ATTACGCCCG ATAACCGCGT GATTTTGGAT CTTGAAATCA CGCAAGACTC ACAGGGTAAA
ACCGTGGATA CTCCCACAGG GCCAGCAGTC GCTATCGATA CTCAACGTAT TGGTACGCAA
GTGCTGGTGG ATAATGGCGA GACCATTGTA CTCGGTGGTA TCTATCAACA GAACTTGATC
AGTCGCGTGA GCAAGGTGCC TATTCTGGGG GATATTCCTT TAGTTGGTTT CTTATTCCGT
AACACGACCG ACAAGAATGA GCGCCAAGAG CTGTTGATTT TCGTGACACC AAAAATTGTG
AACGAAAAAC TCTAA
 
Protein sequence
MKSSAAIKIP LSFLSSGLAK SVIGIALVFG FLPSSFAANR LMDVKYHALV DHQLEVELVF 
EDAINAPQID SNAAPAQLVL TFDDSISGLS KDRLPINQVG VKDIVTTQQD ANLMVTLGLS
KVKPYQGSVV GNSYRLTIND EVAGSQAGNN PFVNSVKNID FRRNANGGGD LLVYLNNRSV
AANVEQIGAK LEVQLYNTDI NSDLLYVMDV QDFSTPVKHF ETFKDDLTTR ILVDVSGNYE
FNYKQEDNLF RLSINKVERA AATKEVKKYN GKTLSLNFQN ISVRTVLQII ADYNNFNLVT
SDTVEGDITL RLDDVPWDQA LDLILQTKGL DKRIEGNILM VAPSEELAIR ESQNLKNKQE
VKELAPLYSE YLQINYAKAT DIAELLKGAD SSLLSPRGSV AVDERTNTVL VKDTAEIIEN
IHRLVEVLDI PIRQVLIESR MVTVKDDVSE DLGIRWGVTD QQGSKGTSGT LEGAGSIATG
TVPSLDNRLN VNLPAAVTNP TSIAFHVAKL ADGTILDLEL SALEQENKGE IIASPRITTS
NQKAAYIEQG VEIPYVQSTS SGATSVTFKK AVLSLRVTPQ ITPDNRVILD LEITQDSQGK
TVDTPTGPAV AIDTQRIGTQ VLVDNGETIV LGGIYQQNLI SRVSKVPILG DIPLVGFLFR
NTTDKNERQE LLIFVTPKIV NEKL