Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0246 |
Symbol | |
ID | 4256076 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 270687 |
End bp | 272741 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 638120853 |
Product | type IV pilus secretin PilQ |
Protein accession | YP_736308 |
Protein GI | 114045758 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4796] Type II secretory pathway, component HofQ |
TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0240868 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.818233 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCTT CTGCCGCGAT AAAAATCCCG TTATCGTTTT TATCTTCAGG CTTAGCTAAG TCTGTTATTG GGATCGCATT AGTATTTGGA TTTTTGCCAT CGAGTTTTGC GGCAAATAGG TTGATGGATG TCAAATACCA TGCTTTGGTC GATCATCAAT TAGAAGTCGA ATTAGTGTTT GAGGACGCTA TTAATGCCCC CCAAATTGAC TCTAATGCTG CACCTGCCCA GTTGGTATTA ACCTTCGATG ACAGTATTTC GGGTCTTTCT AAAGATCGTC TCCCGATCAA TCAAGTCGGC GTGAAGGATA TAGTGACGAC CCAGCAAGAC GCCAATTTAA TGGTGACCTT GGGGTTATCT AAGGTTAAAC CCTATCAAGG TAGCGTAGTT GGTAATTCCT ACCGTCTAAC GATTAACGAT GAAGTTGCAG GCAGCCAAGC CGGTAATAAT CCTTTCGTTA ATAGCGTTAA AAATATCGAT TTTCGTCGCA ACGCTAATGG CGGTGGTGAT TTATTAGTCT ATTTAAATAA TCGCTCGGTT GCTGCAAACG TTGAACAGAT TGGCGCCAAG CTTGAAGTTC AGCTTTACAA CACAGATATT AACAGCGACT TGTTATATGT GATGGATGTG CAGGATTTCT CCACACCCGT AAAACATTTT GAAACCTTTA AGGACGATTT AACGACCCGG ATTTTAGTCG ATGTCTCGGG GAATTATGAG TTCAATTACA AACAGGAAGA CAATCTCTTT AGGCTCTCAA TCAACAAGGT AGAGCGTGCC GCGGCGACAA AAGAGGTAAA GAAATATAAC GGTAAGACCC TTTCGTTAAA TTTCCAGAAT ATTTCAGTAC GTACCGTATT GCAGATTATT GCCGATTATA ACAACTTCAA CTTAGTCACG AGCGACACAG TTGAAGGTGA TATCACCTTA AGACTCGATG ATGTGCCTTG GGACCAAGCA TTGGATTTGA TTCTGCAAAC CAAAGGGCTC GATAAGCGTA TCGAAGGCAA TATTCTTATG GTGGCGCCAA GTGAAGAGCT GGCGATTCGT GAAAGTCAAA ACCTTAAAAA TAAACAAGAA GTTAAAGAGC TGGCACCACT CTATTCTGAA TATCTTCAGA TTAACTATGC CAAGGCGACC GACATAGCAG AGCTATTAAA AGGTGCTGAT TCGAGTTTAT TGTCTCCTCG CGGTTCAGTG GCTGTCGATG AGCGTACCAA CACAGTGTTA GTGAAAGATA CCGCTGAAAT CATCGAAAAT ATTCACCGTT TGGTTGAAGT GCTCGACATT CCCATCCGCC AAGTGTTGAT TGAATCGCGT ATGGTGACGG TAAAAGACGA CGTGTCCGAA GATTTAGGTA TTCGTTGGGG GGTAACAGAC CAGCAGGGTA GTAAAGGCAC CTCTGGAACG CTTGAGGGAG CCGGAAGTAT TGCTACTGGT ACAGTGCCAT CCCTAGATAA CCGTTTGAAC GTGAATTTAC CTGCTGCGGT AACCAACCCT ACAAGTATTG CGTTCCATGT GGCAAAGCTT GCCGATGGCA CTATCTTAGA TTTGGAGTTG AGTGCACTGG AGCAAGAAAA CAAAGGTGAA ATTATCGCTA GCCCTCGCAT TACCACCTCT AACCAAAAGG CGGCGTATAT CGAGCAGGGT GTGGAAATCC CTTATGTGCA ATCCACTTCC AGTGGTGCAA CTTCGGTGAC CTTTAAGAAG GCTGTTTTAT CATTGCGTGT TACACCACAA ATTACGCCCG ATAACCGCGT GATTTTGGAT CTTGAAATCA CGCAAGACTC ACAGGGTAAA ACCGTGGATA CTCCCACAGG GCCAGCAGTC GCTATCGATA CTCAACGTAT TGGTACGCAA GTGCTGGTGG ATAATGGCGA GACCATTGTA CTCGGTGGTA TCTATCAACA GAACTTGATC AGTCGCGTGA GCAAGGTGCC TATTCTGGGG GATATTCCTT TAGTTGGTTT CTTATTCCGT AACACGACCG ACAAGAATGA GCGCCAAGAG CTGTTGATTT TCGTGACACC AAAAATTGTG AACGAAAAAC TCTAA
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Protein sequence | MKSSAAIKIP LSFLSSGLAK SVIGIALVFG FLPSSFAANR LMDVKYHALV DHQLEVELVF EDAINAPQID SNAAPAQLVL TFDDSISGLS KDRLPINQVG VKDIVTTQQD ANLMVTLGLS KVKPYQGSVV GNSYRLTIND EVAGSQAGNN PFVNSVKNID FRRNANGGGD LLVYLNNRSV AANVEQIGAK LEVQLYNTDI NSDLLYVMDV QDFSTPVKHF ETFKDDLTTR ILVDVSGNYE FNYKQEDNLF RLSINKVERA AATKEVKKYN GKTLSLNFQN ISVRTVLQII ADYNNFNLVT SDTVEGDITL RLDDVPWDQA LDLILQTKGL DKRIEGNILM VAPSEELAIR ESQNLKNKQE VKELAPLYSE YLQINYAKAT DIAELLKGAD SSLLSPRGSV AVDERTNTVL VKDTAEIIEN IHRLVEVLDI PIRQVLIESR MVTVKDDVSE DLGIRWGVTD QQGSKGTSGT LEGAGSIATG TVPSLDNRLN VNLPAAVTNP TSIAFHVAKL ADGTILDLEL SALEQENKGE IIASPRITTS NQKAAYIEQG VEIPYVQSTS SGATSVTFKK AVLSLRVTPQ ITPDNRVILD LEITQDSQGK TVDTPTGPAV AIDTQRIGTQ VLVDNGETIV LGGIYQQNLI SRVSKVPILG DIPLVGFLFR NTTDKNERQE LLIFVTPKIV NEKL
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