| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0209 |
|---|
| Symbol | rplF |
|---|
| ID | 4255337 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 232158 |
|---|
| End bp | 232691 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638120814 |
|---|
| Product | 50S ribosomal protein L6 |
|---|
| Protein accession | YP_736272 |
|---|
| Protein GI | 114045722 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0097] Ribosomal protein L6P/L9E |
|---|
| TIGRFAM ID | [TIGR03654] ribosomal protein L6, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000225303 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00711343 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTCTCGTG TAGCAAAAGC ACCAGTATCT ATTCCAGCTG GCGTAGAGGT GACCTTAAAC
GAACAGACCC TGACCGTCAA AGGCGCGAAA GGAAGTCTGA CTCGAGTGAT CAACAATGCG
GTCAATGTTG TTATTGAAGA TGGCGTGATC AAATTCCTTC CTGTTGAGGG CGCTGTTGGC
GCTTGGGCAC AGGCTGGTAC CACACGTGCA TTAGTAAACA ACATGGTTGT TGGTGTATCT
CAAGGTTTTG AGCGTAAGTT AAAGTTAGTT GGCGTTGGTT ACCGTGCGAA GCTCGTCGGT
GCTGACATTG ACCTGACTTT AGGTTTCTCT CATCCGTTAG TACACAAACT GCCCGCAGGC
GTTACTGCAG AGTGTCCAAG CCAAACTGAC ATCGTCCTAC GTGGCGTTGA TAAGCAGTTA
ATTGGCCAAG TCGCTGCTGA GATTCGCGGA TACCGTCCAC CAGAGCCATA CAAAGGCAAG
GGTGTTCGCT ATGACGACGA AGAAGTACGC CGTAAAGAGG CTAAGAAGAA GTAG
|
|---|
| Protein sequence | MSRVAKAPVS IPAGVEVTLN EQTLTVKGAK GSLTRVINNA VNVVIEDGVI KFLPVEGAVG
AWAQAGTTRA LVNNMVVGVS QGFERKLKLV GVGYRAKLVG ADIDLTLGFS HPLVHKLPAG
VTAECPSQTD IVLRGVDKQL IGQVAAEIRG YRPPEPYKGK GVRYDDEEVR RKEAKKK
|
|---|
| |