| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0152 |
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| Symbol | |
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| ID | 4257068 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 175350 |
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| End bp | 176915 |
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| Gene Length | 1566 bp |
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| Protein Length | 521 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638120748 |
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| Product | type II secretion system protein E (GspE) |
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| Protein accession | YP_736215 |
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| Protein GI | 114045665 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAA TACAAGTAAC CCAAGTCGAG GATTTAAGCC TAGTTTCTAA CGAACTAGGG
CTTGAAGCCG AAGGTGATGA GGTATTTCGC TCCAGCAGCA AAGAGCGTTT ACCCTTTGCC
TTTGCCCACC GCCATGAGGT GATTTTAGCC TTTGGCGAGG ATGGCGCCTT GAGCCTGTTT
TATACCGCCA AAACTCCGTT AGCGGCCATG CTCGAAGCGC GCCGTTACTC GGGTGTGGAT
TTGCCGCTGG TATTGCTCGA ACCGGGCAAG TTTGAGGCGA AATTAACTCA GGCCTATCAA
GCCAACTCAT CCGAAGCGCA GCAGCTGATG GAAGATATTG GCAACGAGAT GGATTTATTC
ACCCTCGCCG AAGAGCTGCC GCAAACCGAA GATCTGCTCG AAGGCGATGA TGATGCGCCT
ATTATCAAGC TGATTAACGC CTTGTTATCT GAAGCGATTA AAGAAGAAGC CTCGGATATC
CATATCGAAA CCTACGAGAA GCAATTAGTC GTGCGTTTCC GTATCGACGG TGTGCTGAAG
GAAGTGCTTA AACCGAATCG TAAGCTGTCA TCCTTGTTGG TGTCGCGGAT TAAGGTGATG
GCGCGTCTCG ATATCGCCGA GAAACGTGTG CCACAAGACG GCCGTATTTC GCTGCGGATT
GCGGGTCGTG CGGTGGATGT GCGGGTATCG ACCATGCCAT CGAGCCATGG CGAGCGTGTG
GTGCTGCGTC TGTTAGATAA AAACGCCGGT AATCTGGATT TAAAACAATT GGGTATGACC
GACAGTATCC GTGCCAAGTT CGACGAGCTT ATTCGTCGTC CCCACGGCAT TATTCTGGTC
ACAGGCCCTA CGGGTTCAGG TAAGAGTACT ACGCTGTACG CCGGGCTTAC CGAGATTAAC
TCTAAAGATA CCAACATCTT AACCGTTGAA GATCCGATCG AATACGAGTT AGAAGGTATA
GGTCAAACCC AAGTGAACAC TAAGGCTGAC ATGACCTTCG CCCGTGGTCT GCGTGCGATT
CTGCGTCAGG ACCCGGATGT GGTGATGATC GGCGAAATCC GTGACCTTGA AACCGCCCAA
ATTGCGGTGC AGGCATCCTT GACTGGTCAC TTAGTGATTT CAACCCTGCA TACCAACACG
GCTTCTGGTG CAATTACCCG TTTGCAAGAC ATGGGCGTAG AGCCATTCCT AGTGTCATCG
AGTTTGCTTG GGGTATTAGC ACAGCGTTTG ATACGTACCC TCTGTCCAAA ATGTAAGACA
GAGCATGTGC CGGATGTCCG TGAGCGTGAG CTGCTGGGGA TTGCGGCGGA TGATCATCGC
CATATTTATC GCGCCAATGG CTGTAAGGCC TGTGGTAACA GTGGTTACCG TGGTCGTACT
GGCATCCATG AGTTATTGCT GGTCGATGAT AATGTGCGCG AGCTGATCCA CGGAGGTCGT
GGTGAGCTGG CAATTGAGAA ATATATTCGC CAGTCGGTGC CGAGCATTCG CCATGATGGT
ATGAGCAAGG TGCTCTCAGG TATCACTACT CTGGAAGAAG TCCTGAGGGT GACCCGCGAG
GAGTAA
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| Protein sequence | MSEIQVTQVE DLSLVSNELG LEAEGDEVFR SSSKERLPFA FAHRHEVILA FGEDGALSLF
YTAKTPLAAM LEARRYSGVD LPLVLLEPGK FEAKLTQAYQ ANSSEAQQLM EDIGNEMDLF
TLAEELPQTE DLLEGDDDAP IIKLINALLS EAIKEEASDI HIETYEKQLV VRFRIDGVLK
EVLKPNRKLS SLLVSRIKVM ARLDIAEKRV PQDGRISLRI AGRAVDVRVS TMPSSHGERV
VLRLLDKNAG NLDLKQLGMT DSIRAKFDEL IRRPHGIILV TGPTGSGKST TLYAGLTEIN
SKDTNILTVE DPIEYELEGI GQTQVNTKAD MTFARGLRAI LRQDPDVVMI GEIRDLETAQ
IAVQASLTGH LVISTLHTNT ASGAITRLQD MGVEPFLVSS SLLGVLAQRL IRTLCPKCKT
EHVPDVRERE LLGIAADDHR HIYRANGCKA CGNSGYRGRT GIHELLLVDD NVRELIHGGR
GELAIEKYIR QSVPSIRHDG MSKVLSGITT LEEVLRVTRE E
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