| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0151 |
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| Symbol | |
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| ID | 4257067 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 173251 |
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| End bp | 175353 |
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| Gene Length | 2103 bp |
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| Protein Length | 700 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638120747 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_736214 |
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| Protein GI | 114045664 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.124297 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATAACA AACGGATTCG ACGCAAACTG ATTGCTGGAG TTGTGGCTGG CGCCACTATG
CTGACCTCGC AATTTGTTTG GTCTGAACAA TATGCGGCCA ACTTTAAAGG CACTGATATC
CAAGAGTTTA TCAACATCGT TGGTAAAAAC CTGAATAAAA CCATCATTGT CGACCCGACC
ATTCGCGGCA AGATCAACGT GCGCAGTTAT GATCTGCTCA ACGATGAGCA GTATTACCAA
TTCTTCCTCA ACGTGTTGCA AGTGTACGGT TATGCCATCG TCGAGATGGA AAACAACGTC
ATCAAGGTCA TTAAAGACAA AGATGCGAAA ACCGCTGCGA TTCGTGTTGC TAACGACAAC
GACCCAGGTT TAGGTGATGA AATGGTCACC CGCATCGTGG CGCTGTATAA CACCGAAGCC
AAGCAGTTGG CGCCGTTGTT ACGTCAGTTA AATGATAACG CCGGTGGCGG TAACGTAGTG
AACTACGACC CATCGAACGT ACTGATGCTG TCAGGCCGCG CCGCTGTAGT TAACAAGTTA
GTTGAAATCG TTCGCCGTGT AGATAAGCAG GGCGATACCT CGGTACAAGT GGTGCCGCTC
GAATACGCCT CAGCCGGTGA AATGGTGCGA ATTATCGATA CTCTTTACCG CGCGACAGCT
AACCAAGCGC AGCTCCCGGG ACAAGCGCCC AAGGTCGTTG CCGACGAGCG CATTAACGCC
GTAGTGGTCA GTGGTGACGA AAAGAGCCGC CAACGCGTGG TTGAGCTTAT CCATCGCCTC
GATGCCGAGC AGGCCAGCAC GGGCAATACT AAGGTACGTT ATTTACGTTA TGCCAAGGCT
GAAGATTTAG TCGAGGTGCT GACCGGATTT GCGCAAAAGC TTGAGGGTGA AAAAGATCCA
AGTGCCCAGG CTGGCGGTAA ACGTCGTAAT GAAATCAATA TTATGGCCCA CACGGATACT
AACGCCTTAG TGATCAGCGC CGAGCCAGAT CAAATGCGCA CTATCGAGAG TGTGATTAAC
CAACTCGATA TTCGCCGCGC CCAAGTATTA GTCGAAGCCA TTATCGTGGA AGTCGCCGAA
GGCGATAACG TCGGTTTTGG TGTGCAATGG GCCGCTAAAG CGGGCGGTGG TACTCAGTTC
AATAACTTAG GCCCAACCAT TGGTGAAATT GGCGCCGGTA TTTGGCAGGC ACAGGGAGAA
GATGGGACAA CTGTTTGTAC CGAGAATGGC ACTTGTACTG AAAACCCAGA TTCTAGAGGT
GATGTGACTT TACTTGCCCA AGCCTTAGGT AAAGTGAATG GTATGGCTTG GGGCGTGGCC
ATGGGCGACT TTGGCGCCTT AATACAAGCA GTATCGGCCG ATACCAACTC AAACGTACTG
GCGACACCTT CGATTACAAC TCTAGATAAC CAAGAAGCCT CGTTTATCGT CGGTGACGAA
GTGCCGATTC TGACCGGTTC TACCGCCAGC TCAAACAACA GTAACCCATT CCAAACCGTT
GAACGTAAAG AGGTTGGGGT GAAGTTAAAA GTGGTGCCCC AGATCAACGA AGGCAACGCG
GTTAAGCTCG CCATTGAGCA AGAAGTCTCG GGTGTAAACG GTAACACGGG TGTGGATATC
TCCTTCGCGA CTCGCCGTTT AACCACCACT GTGATGGCCG ACTCAGGGCA AATCGTGGTG
CTCGGTGGTT TGATTAACGA AGAAGTCCAA GAAAGCGTGC AGAAAGTACC ATTCCTCGGT
GATATTCCGG TGCTCGGACA CTTATTCAAA TCTTCTTCCA GTAAGAAGAC CAAAAAGAAC
CTGATGATCT TCATCAAGCC CACCATTATC CGTGATGGTG TGACTATGGA AGGTATCGCA
GGCCGTAAAT ACAACTATTT CAGAGCATTG CAACTTGAGC AGCAAGAGCG CGGCGTGAAC
CTGATGCCAA ATACTCAAGT GCCAATTCTG GAAGAATGGA ATCAATCTGA ATACCTGCCG
CCCGAAGTGA ACGATATTTT AGATCGTTAC AAAGAAGGCA AAGGGTTAGA CACCCAGATG
CGTGAAACGG ACTCGACCCT CAAGTCGCTG GATGAAAACA AGAACAAAGA TAAAACACAA
TGA
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| Protein sequence | MNNKRIRRKL IAGVVAGATM LTSQFVWSEQ YAANFKGTDI QEFINIVGKN LNKTIIVDPT
IRGKINVRSY DLLNDEQYYQ FFLNVLQVYG YAIVEMENNV IKVIKDKDAK TAAIRVANDN
DPGLGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVLML SGRAAVVNKL
VEIVRRVDKQ GDTSVQVVPL EYASAGEMVR IIDTLYRATA NQAQLPGQAP KVVADERINA
VVVSGDEKSR QRVVELIHRL DAEQASTGNT KVRYLRYAKA EDLVEVLTGF AQKLEGEKDP
SAQAGGKRRN EINIMAHTDT NALVISAEPD QMRTIESVIN QLDIRRAQVL VEAIIVEVAE
GDNVGFGVQW AAKAGGGTQF NNLGPTIGEI GAGIWQAQGE DGTTVCTENG TCTENPDSRG
DVTLLAQALG KVNGMAWGVA MGDFGALIQA VSADTNSNVL ATPSITTLDN QEASFIVGDE
VPILTGSTAS SNNSNPFQTV ERKEVGVKLK VVPQINEGNA VKLAIEQEVS GVNGNTGVDI
SFATRRLTTT VMADSGQIVV LGGLINEEVQ ESVQKVPFLG DIPVLGHLFK SSSSKKTKKN
LMIFIKPTII RDGVTMEGIA GRKYNYFRAL QLEQQERGVN LMPNTQVPIL EEWNQSEYLP
PEVNDILDRY KEGKGLDTQM RETDSTLKSL DENKNKDKTQ
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