| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0070 |
|---|
| Symbol | |
|---|
| ID | 4256604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 82923 |
|---|
| End bp | 84062 |
|---|
| Gene Length | 1140 bp |
|---|
| Protein Length | 379 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638120665 |
|---|
| Product | transport protein, putative |
|---|
| Protein accession | YP_736133 |
|---|
| Protein GI | 114045583 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1668] ABC-type Na+ efflux pump, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.277541 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAA TCATCGCAAT GGTTCGCAAG GAACTGATAG ACGCCGCCCG CGATAAACGC
TCTGTGATGG CGGGACTCTA CTACGCCATC GGCACGCCGC TGATCATATG TGGCCTGTTT
ATGGTACTTA TCGGCCAGCT GACCAGCCCA GACGATCTCA AAATCAGCAT CACTAACCCC
GACAAAGCGC CAGACTTAGT GAGATTTTTG TCCAACAAGG GCATTACCCA AGGTGAAGCA
GGCGCTAAGG ATCTGAAAGC CATCGAGCTG ATTATCAACC CCGACTATGC CAAGCAGATG
AACCAAGGCA AAGGCGCCGA AATCACTATC GTGGCCGATA ACTCAGAGGA AAAACTGCAA
AACTCGATTC GTCGCTTAGA GAAACAGTTG CAGGCCTACA GCGCCGAAAT GGGTAGCCTA
CGCTTAATCG CCCGTGGCAT CGACCCTCGA GTGGTGCAGC CACTGAAAGT GAATGTGCAT
GACCAAGCCA CGACCGACTC TAAGGGCGGG ATGATCTTAG GCATCGCCAT TTTCACTATG
ATTTATTCAG TGTTTATCTC GGGGATGAAT CTGGCCATCG ACACCAGCGC CGGTGAGCGT
GAGCGCAACT CCTTGGCATT GTTACTCAGC CATCCGCTGA CCACGCGCCA ATTAGTGCTC
TCTAAAATCA TCGCTGTCGG CCTGTTTGCC CTGCTCGGCT TAGTGTTGAT TTTACTGGTG
TCTAAGGTCG CCTATACCTT CGTGCCTTGG CAGGAACTCG GCTTTAGCGT CAGCATCACC
AATGAGTTTA TGGCGCTAAT GCTGCTGGTC GGTATTCCCG TCGCGCTGAT GGCCGCCTGT
CTGCAATTGT TTGTGTCCTT TATGGCCAAA ACCTTTAAGG AAGCCCAGTC CTACCTGACC
ATGGTGTTGT TTGTGCCCTT GGCGCTATCA ATGGCGGCCA GCTACAACAT AGCGCCGGAC
ATACTGCAAT GGTTGCCCGT ATCCGGTCAG CAACAGGCAC TGATGGACTT TATCAAAGGT
AAGGACATGA GCATGCTGCA ACTGCTGGTA TCGACGCTCG GCACCTTAGC CATCGCCCTG
GTCTTGGCGC TTGGTATGGA AAAATCCTTA AAGAGTGAAA AAGTGGTCTT CGGCTTATAA
|
|---|
| Protein sequence | MNKIIAMVRK ELIDAARDKR SVMAGLYYAI GTPLIICGLF MVLIGQLTSP DDLKISITNP
DKAPDLVRFL SNKGITQGEA GAKDLKAIEL IINPDYAKQM NQGKGAEITI VADNSEEKLQ
NSIRRLEKQL QAYSAEMGSL RLIARGIDPR VVQPLKVNVH DQATTDSKGG MILGIAIFTM
IYSVFISGMN LAIDTSAGER ERNSLALLLS HPLTTRQLVL SKIIAVGLFA LLGLVLILLV
SKVAYTFVPW QELGFSVSIT NEFMALMLLV GIPVALMAAC LQLFVSFMAK TFKEAQSYLT
MVLFVPLALS MAASYNIAPD ILQWLPVSGQ QQALMDFIKG KDMSMLQLLV STLGTLAIAL
VLALGMEKSL KSEKVVFGL
|
|---|
| |