Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0060 |
Symbol | |
ID | 4256594 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 71126 |
End bp | 72574 |
Gene Length | 1449 bp |
Protein Length | 482 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 638120655 |
Product | major facilitator transporter |
Protein accession | YP_736123 |
Protein GI | 114045573 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.000451117 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCCCAG CGTCTGCTTC GTCCCAACAT GAGCCTCTGC CCACCTCGGT TTTTCTGGCG ATTTTCTCTG CCGTATTCTT ACCCATGTTT CTGGCGGCGG TCGATCAAAC CCTACTCGCC ACCGCAACCC CTGCGATAGT GGAAGATCTT GGCGGCCTCA GGCAAGCCTC GTGGATCACT ATCGGTTATA TGCTGGCGAT GGCGGCCAGT GTGCCTATTT ACGGCTGGCT AGGGGATAAC TTTGGCCGCG CTAAAATCCT GATGATCGCC TTAGTGGTGT TTGCGTTGGG TTCAATCGTT TCCGCCAGTG CCAGTACGAT GGACCATATG ATTGCTGGGC GAATACTCCA AGGTCTCGGC GGTGGCGGGC TGATGAGTCT GTCCCAATCC CTTGTGGGGG AATTGGTGCC GATACGGCAA AGGGCGCGTT TTCAGGGCTA TTTTGCCGCT ATGTTTACCC TCGCCAGTGT TGGCGGCCCT GTGATTGGTG GCTTTGTGGT GCATGCCTAT TCTTGGCACT GGTTATTTTG GGCGAATATT CCTTTGGTCA TGCTGGCGGT TTGGCGACTT AATCGCTTGC ATAAACAGAG CGTTAAACCG GTGCGGCAAG GGCGGTTTGA CTTACTCGGC GTACTGTTAT TTCCCACGAT CATCACGGCG CTGCTGTATT GGTTGTCAGT GGCGGGGCAA GACTTTGCTT GGCTATCGAC CACAAGTTTA GGCTTTATGG GATTTATCTG TGTGGGCGCC CTAGTGCTCT TGTGGTGGGA GCGTCGGCGA GAGAGTCCTT TCTTACCGCT GGATTTACTC GCCAATAAAG CCATTTATAT GCCGCTCTTC ACGGCCGCGC TGTTTGCCGC CTGCCTGTTT GCGATGATCT TCTTTTTACC CATTTACTTG CAGGTCGGTC TGCACACCAA TCCGGCCAAA ACGGGCTTGC TGCTGATGCC AATGACCTTT GGCATAGTGA CAGGTTCCAC CATCGCTGGC AGGCTGTTGA GTCGGGATGT GGCGCCTAAA TGGTTGCCGA CCTTCGGCAT GGGCTTGGCC TTTATCGGCT TGCTCTTAAT CGGTTTAGTG CCGCCGAATG CGAATTTGAT CGGCGCTTTA GGTGTGCTGG TGGGCATTGG CTTAGGGACT GTGATGCCTA GCGTGCAGCT AGTGGTGCAG AGCGTGTCGG GCAAGGCGCG TTTAAGCCAA ATCACCGCTA TGGTGTCCTT GAGTCGTTCC ATGGGCGCGG CAATTGGTAC GGCTTTGTTC AGTCTGTTGC TATATGGCTT ATTACCGCTC GACGGGGCGC AGGTGGGAAT TGCGGCAATA AAGCAGTTAC CCATAGAGGT TGTGCATCAC GCCTTCCAAT GGGGTTTTAT CGCGGCAGCT CTGGTGGCGC TCAGCTCGGC GATTGTGGGT TATTTCTCGC CTGCGACTGC GCTTAGGGAT CATGAGTAG
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Protein sequence | MTPASASSQH EPLPTSVFLA IFSAVFLPMF LAAVDQTLLA TATPAIVEDL GGLRQASWIT IGYMLAMAAS VPIYGWLGDN FGRAKILMIA LVVFALGSIV SASASTMDHM IAGRILQGLG GGGLMSLSQS LVGELVPIRQ RARFQGYFAA MFTLASVGGP VIGGFVVHAY SWHWLFWANI PLVMLAVWRL NRLHKQSVKP VRQGRFDLLG VLLFPTIITA LLYWLSVAGQ DFAWLSTTSL GFMGFICVGA LVLLWWERRR ESPFLPLDLL ANKAIYMPLF TAALFAACLF AMIFFLPIYL QVGLHTNPAK TGLLLMPMTF GIVTGSTIAG RLLSRDVAPK WLPTFGMGLA FIGLLLIGLV PPNANLIGAL GVLVGIGLGT VMPSVQLVVQ SVSGKARLSQ ITAMVSLSRS MGAAIGTALF SLLLYGLLPL DGAQVGIAAI KQLPIEVVHH AFQWGFIAAA LVALSSAIVG YFSPATALRD HE
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