| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3915 |
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| Symbol | |
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| ID | 4254478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4669317 |
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| End bp | 4671767 |
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| Gene Length | 2451 bp |
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| Protein Length | 816 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638120560 |
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| Product | diguanylate phosphodiesterase |
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| Protein accession | YP_736035 |
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| Protein GI | 113972242 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.178171 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTCGCA AACTCTCGCT CGCAGTATTG ATACCAGTAT GCATGCTAAC ACTTTATTTG
GTGTTGGTTA CGGCTGAGTA TTTTTATGAG AGTGAGTTGG TGCGAAATGA ATTAGCTGAC
CGCCAAGTCA GCCAGATCAA GCAGCAGTTA TTACGTATGC AAGCCGTGGT GCAATCGGCG
CAAGCATTAC AAGACATAGA ACGGATCGAG CAGGAAGTCT CTCTGGCGAC CTTGGATATG
AACGTCATGG TTTATATCTT ATTGGACGCC AATAGCCTGA TCCGCTTTGC AAATCATACA
GTTTGGCGTG ATAGCAATGC CATTGAAGTC ATCGATGGAT ATGATGTGGT TCAGCATCAT
GCGGTGGTGC AATCTGGTCA GGCGAATATT TTTGTTAATC CTAAAAGGTT ATCTATTCAA
GCTTATTATC CTGTGGACGC TCAATATCCC GGCGCCACAG AGCTGGTCTA TCTCGAGTCG
GATTTAGCGC CTCTAGTTGC GAGAGCTTCT ACCGAGTTAC AACAAAGATT TATGCGTGTC
TGGGGGCTTG GGGCGCTGCT GTTAATCGGT TTTACCTTCG TTTTATATTA TCTGCTGATC
CGCCCATTCA AGATGTTGAG TCAATCGGCC AAGCATGTCG GTACTCCAGA ATTCTCAACT
CAAGTGCCTT GGAGCGCGTC CGAGGTTTTA TCCCTACAGA CGAGTCTGCA ACAGGTTCAT
GAGCGCTTAG CGCGAGCCGT CAAGCAGCTA AATGATAGTG AGCAACGTTG GTTGTTTGCG
GTCGAAGGCT CGCGTAACGG TATTTGGGAT TGGGATATTC GGACTGGTGA GGTGTTTTTG
TCTGATCGCT GGAAGGAAAT GATCGGCTAT CAGCCCGACG AACTCGAAGG TGCATTCCAG
ACTTGGGAGA GCCGTTTGCA TCCCGATGAT AGACAAACCG TGTTGGACTG TCTGCAGGAA
TACGTCAGCG GCAAGACAAA AGAATTTGAG AGTGTGCATC GTTTACTGCA TCGCGATGGC
CATTATGTCT GGGTATTCGA CCGTGGCATG TTGGTTGATT GGGATCATCT CGGTCGCCCC
ACTCGCATGA TTGGTATTCA TGTGGATGTG TCTGAGAGTG AGCGAAACCA TGCCGCGATC
GCCGAGTTGG TTAAGCAATC TGAGACTGGC CATAGGATGC TCCCCGAAGC CTTTATGCTG
CAGTTGTCCC AATATATTAG CCAGCGAAGC AGCACTGGTC ACTGGGACGC CTTGTTATTA
CTTAACGTTG AAACTCATAC TGTTAGTAAT ACGCTAACCT CCCATGAGCT TGAACGATTA
TTATCGCAAC TGAGTGCGAG GCTCTCGAGT TATTTTGCTG AAAATATTGT GATATCCCAT
ATAGAGCTTG ATCAGTTTGC AATTTTGATC AAAGAGTTGG CGGCTGACGC TAAGATGGCT
GGTCGGCGCG CATTGGCACT CGCGACTGAG TTAAGGCATA TAGCATCGCG TCCATTTCAT
CATGCTGACC AGAGTGTCAA CTTCAGCACC AATATTGGTA TTTGCTTATT GGATTCGATT
GAAACGATCG TGCCTGAGAT TGCACTGCGC CGCGCCAAAT TAGCGATGCA ACATGCTCAC
TCGTTCGAGC AGGCCGGCTG TGCCTTCTAT CATCCTGATT TAGAAAATAT TCAAGATCCC
GAATTGTCGT TATGCCAGCA ACTAAAGCGT GCGATTACAG ACAATCAGTT GTCATTGATG
TTCCAGCCTG TTGTGGATAT GCAAGGAAAG ATAGTCGCTG CCGAAGTCTT ATCCCGTTGG
CATTTAGCCA ACGGTGATAT TATCCCCGTC GCTAAGTTTA TTGGCCTCGC CGAGCGCCAT
GGTCTGATTG CATCACTCGA TTTAAATGTT GCTACGCGCG TTTGCCAGTT GATTAAACAA
TTTAAACAGC AGGGCATTAG CCTGCCACGT TTAACTCTGA ATATCAGTAC CTTCTCTTTC
TGCCAAGCTG ATTTCGTCGA GCAATTAGTT GCGTTAACCC GTCGCTACGA GCTGGATGAC
AATCAGCTGG GTATTGAGTT AACCGAGAGT GCATTACTAA CATCTGCCTC CTTTATTCAG
CCGAGGATCA GTCTGCTCGC GGAAGCTGGG GTTGCGATAA CACTAGATAA CTTTGGTGCG
GGACAGGGCG CCTTGAGTTG CTTGCGTCAC TATCCCTTGA ATGAGGTGAA GCTCGATTTA
CATTGTGCCG CTAACTTAAC GACGGATACG AGCTGGAGCC AAGCGCTGAT TCAGTCGGTA
CAAGCCTTTA ACTTGTCTAT TGTGGCCAAA GGCGTCGAAT CACCGCAGCA ACAGCAACTC
TTTAGCCGCT TAGGTTGTAC CCATTTCCAA GGCTACAATA TTGCGCGTGC CTTAAGTGTT
AATGACTTTA AACAGCTTGT TTGTCCACGT CCCTTGTTGC GTAGCGTTTA A
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| Protein sequence | MLRKLSLAVL IPVCMLTLYL VLVTAEYFYE SELVRNELAD RQVSQIKQQL LRMQAVVQSA
QALQDIERIE QEVSLATLDM NVMVYILLDA NSLIRFANHT VWRDSNAIEV IDGYDVVQHH
AVVQSGQANI FVNPKRLSIQ AYYPVDAQYP GATELVYLES DLAPLVARAS TELQQRFMRV
WGLGALLLIG FTFVLYYLLI RPFKMLSQSA KHVGTPEFST QVPWSASEVL SLQTSLQQVH
ERLARAVKQL NDSEQRWLFA VEGSRNGIWD WDIRTGEVFL SDRWKEMIGY QPDELEGAFQ
TWESRLHPDD RQTVLDCLQE YVSGKTKEFE SVHRLLHRDG HYVWVFDRGM LVDWDHLGRP
TRMIGIHVDV SESERNHAAI AELVKQSETG HRMLPEAFML QLSQYISQRS STGHWDALLL
LNVETHTVSN TLTSHELERL LSQLSARLSS YFAENIVISH IELDQFAILI KELAADAKMA
GRRALALATE LRHIASRPFH HADQSVNFST NIGICLLDSI ETIVPEIALR RAKLAMQHAH
SFEQAGCAFY HPDLENIQDP ELSLCQQLKR AITDNQLSLM FQPVVDMQGK IVAAEVLSRW
HLANGDIIPV AKFIGLAERH GLIASLDLNV ATRVCQLIKQ FKQQGISLPR LTLNISTFSF
CQADFVEQLV ALTRRYELDD NQLGIELTES ALLTSASFIQ PRISLLAEAG VAITLDNFGA
GQGALSCLRH YPLNEVKLDL HCAANLTTDT SWSQALIQSV QAFNLSIVAK GVESPQQQQL
FSRLGCTHFQ GYNIARALSV NDFKQLVCPR PLLRSV
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