Gene Shewmr4_3913 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3913 
Symbol 
ID4254476 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp4666439 
End bp4668244 
Gene Length1806 bp 
Protein Length601 aa 
Translation table11 
GC content49% 
IMG OID638120558 
Producthypothetical protein 
Protein accessionYP_736033 
Protein GI113972240 
COG category[S] Function unknown 
COG ID[COG4805] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.10642 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATAAAC TCTTTACCCC AAGCTTACTG ATTTGCGCAC TTAGTGCCTG TAGCGCGGTT 
CAGCCCCCAA TCGAATCCAC CAAACAAACA ACGGTAGCCG TTGCGCAGTC CACGGCCAAG
ACTATGGCCC CAGCACTGCA AGCAATAGTG GATCAAAGTT GGCAACTCCA ACTCAGTGCC
AGCCCTGAAA TGGCCTATGG AATGGGGGAT AAGAGTGCTG CGGGTAAACT GCAAGATCTG
TCTCCCGAAG CCTTAGCTAA GCTCAATCAG GGACAAATGG CCATTCTCGC CCAATTGAAA
GCACTGGATC GCAGCAAACT GAGTAAAGAG GATAAAATCA ACGCCCAAAT CCTCGAAGAT
CAGATCCAAA ATGAGGTCGA CCTGTATAAA TACAAGGATT ACTACCTGCC GATCACCGCA
GAGAGTGGCT TCCACGCCTA TATATCTTCC ATTGCGCAAG GGCGGTTCAA CACTCTAGAG
GATTACCAAA ACTACCTAGG TAAGCTCAAG GCACTACCGA CCTATTTTGC CCAGCAAACC
CATTGGTTAA AACAAGGCTT AAAGGAAGGG ATTACGCCCC CTAAAGCCAC GCTTAAGGGA
TTTGAAAACA GCATTAGTGC ATACATCTTA CCGGTAGAGA AAAGTAGTTA TTTCAAGCCT
TTTACTCAAT ACCCAAGCCA CTTTACTGAG GCGCAAAGAG CGCAACTGAC CCAAGAAGGC
CGAGCATCGG TCGAGCAGAA TGTGCTCCCA ACCTATCAGG CTTTTTATGA TTTTATGACT
CATGAGTATA TGCCCAACAC TCGGGAAAAT ATTGCCGCCA ACAGCTTACC CGATGGTGAT
GCCTTCTATG AAAACCGCGT TCGTTACTAC ACGACCTTAA ATATGACCTC GGCCGAAGTG
CACGAGCTTG GTTTAAAAGA AGTGAAGCGT ATCCGTCAGG AAATGGAGCA AGTCATTAAG
TCTGTTGGCT TTAAAGGCAG CTTTGCCGAC TTTTTACATT TCTTACGAAC CGATCCCCAG
TTTTATACTA CTAGTGCGGA TCAGCTCCTG AAGGAAGCGG CCTTTATTGC CAAAAAAGCA
GATGCCATGT TACCTAAATA TTTTGGTAAA TTGCCGCGAA AACCCTATGG TATCGCGCCA
GTGCCTGCCG AAATCGCCCC TAAATACACT TCAGGCCGTT ATTCAGGCTC TAATCGTGAT
GACGAGCCGG GTTACTACTG GGTTAATACC TACGCCTTAG ATAAGCGCCC GCTCTATGAA
CTCGAAGCGC TAACGCTGCA CGAAGCCGTG CCCGGGCATC ATCTGCAGAT TTCACTTAAC
TCCGAACTGA GCTCATTGCC CGATTTTCGT CGCTACAGCT ATATTTCGGC CTTTGGTGAA
GGTTGGGGAT TGTATAGCGA GTACTTAGGC TTAGAAGCGG GATTCTATCA AGACCCTTAC
AGTAACTTTG GACGCCTCAC TTACGAGATG TGGCGCGCCG CTCGTCTCGT TGTCGATACG
GGGATGCACG CCCAAGGTTG GAGTCGAGAA CAAGCCATCG AGTTTATGGC GAGCAACACG
GCGTTATCGC TCCACAATGT GACCACTGAG ATTGACCGCT ACATTACCTG GCCAGGGCAA
GCGCTCTCCT ACAAGATTGG TGAGCTCACC ATTAAACGCC TGCGCGTGAA AGCCGAGCAA
GCCTTAGGCG ATAAATTTGA TATTCGCGCC TTCCACGACG CGGTATTAGA AAATGGTTCT
GTGCCTATGT CGGTGCTGGA GCAGCAAATA AACGACTTTA TCGAAGCGCA AAAAGCCGCG
ATTTAA
 
Protein sequence
MHKLFTPSLL ICALSACSAV QPPIESTKQT TVAVAQSTAK TMAPALQAIV DQSWQLQLSA 
SPEMAYGMGD KSAAGKLQDL SPEALAKLNQ GQMAILAQLK ALDRSKLSKE DKINAQILED
QIQNEVDLYK YKDYYLPITA ESGFHAYISS IAQGRFNTLE DYQNYLGKLK ALPTYFAQQT
HWLKQGLKEG ITPPKATLKG FENSISAYIL PVEKSSYFKP FTQYPSHFTE AQRAQLTQEG
RASVEQNVLP TYQAFYDFMT HEYMPNTREN IAANSLPDGD AFYENRVRYY TTLNMTSAEV
HELGLKEVKR IRQEMEQVIK SVGFKGSFAD FLHFLRTDPQ FYTTSADQLL KEAAFIAKKA
DAMLPKYFGK LPRKPYGIAP VPAEIAPKYT SGRYSGSNRD DEPGYYWVNT YALDKRPLYE
LEALTLHEAV PGHHLQISLN SELSSLPDFR RYSYISAFGE GWGLYSEYLG LEAGFYQDPY
SNFGRLTYEM WRAARLVVDT GMHAQGWSRE QAIEFMASNT ALSLHNVTTE IDRYITWPGQ
ALSYKIGELT IKRLRVKAEQ ALGDKFDIRA FHDAVLENGS VPMSVLEQQI NDFIEAQKAA
I