| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3901 |
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| Symbol | tdh |
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| ID | 4254464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4652305 |
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| End bp | 4653330 |
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| Gene Length | 1026 bp |
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| Protein Length | 341 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638120546 |
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| Product | L-threonine 3-dehydrogenase |
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| Protein accession | YP_736021 |
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| Protein GI | 113972228 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG1063] Threonine dehydrogenase and related Zn-dependent dehydrogenases |
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| TIGRFAM ID | [TIGR00692] L-threonine 3-dehydrogenase
[TIGR01202] 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00409651 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.55097 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAGCAC TAAGCAAGTT AAAAGCCGAA AAAGGCATTT GGTTAGTCGA TGCGCCTAAG
CCTGAAATGG GCCACAACGA TCTGCTGATC AAGATTAAAA AGACCGCCAT TTGTGGCACC
GACATGCACA TCTACAACTG GGACGAATGG TCACAAAAAA CCATTCCTGT GCCTATGGTG
GTAGGTCACG AGTATGTGGG TGAAGTGGTT GATATCGGTC AAGAAGTTCG TGGCTTTAAA
ATTGGTGACC GCGTTTCTGG CGAAGGCCAT ATCACCTGCG GCCACTGTCG TAACTGCCGC
GCTGGTCGCA CCCATTTATG CCGCAACACC TCAGGTGTGG GTGTAAACCG CGAAGGTTCA
TTTGCCGAAT ACTTAGTGAT CCCAGCCTTT AACGCCTTCA AAATTCCCGA TGATATCAGC
GATGATTTAG CGTCTATCTT CGACCCGTTC GGTAACGCAG TGCACACAGC GCTGTCATTC
GACTTAGTGG GCGAAGACGT GTTAATCACT GGCGCGGGCC CTATCGGTAT TATGGCTGCG
GCCGTATGTC GCCACGTTGG TGCTCGCCAT GTGGTCATTA CCGATGTTAA TGAATACCGC
TTAGAGTTAG CCCGTAAAAT GGGTGCTACC CGCGCCGTTA ACGTGGCTCA GGAAAGCCTG
AAAGACGTGA TGAAAGAACT CGGCATGACC GAAGGCTTCG ACGTGGGTCT AGAAATGTCT
GGCGTACCGT CAGCCTTCCA CGCCATGTTA GATACCATGA ACCACGGTGG CAAAATCGCG
ATGCTCGGTA TCCCGGGTGG CGAAATGGCG ATTGATTGGA GCAAAGTGAT CTTCAAGGGT
CTGGTCATCA AAGGCATTTA CGGCCGTGAA ATGTTCGAAA CTTGGTACAA GATGGCAAGC
TTGATCCAAT CTGGCTTAGA TATTTCGCCT ATCATCACGC ACCACTACAA GATTGATGAT
TTCCAAAAAG GCTTCGACGC TATGGGCTCG GGCCAATCCG GTAAAGTCAT CCTCAGCTGG
GATTAA
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| Protein sequence | MKALSKLKAE KGIWLVDAPK PEMGHNDLLI KIKKTAICGT DMHIYNWDEW SQKTIPVPMV
VGHEYVGEVV DIGQEVRGFK IGDRVSGEGH ITCGHCRNCR AGRTHLCRNT SGVGVNREGS
FAEYLVIPAF NAFKIPDDIS DDLASIFDPF GNAVHTALSF DLVGEDVLIT GAGPIGIMAA
AVCRHVGARH VVITDVNEYR LELARKMGAT RAVNVAQESL KDVMKELGMT EGFDVGLEMS
GVPSAFHAML DTMNHGGKIA MLGIPGGEMA IDWSKVIFKG LVIKGIYGRE MFETWYKMAS
LIQSGLDISP IITHHYKIDD FQKGFDAMGS GQSGKVILSW D
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