| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3802 |
|---|
| Symbol | |
|---|
| ID | 4254365 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 4538745 |
|---|
| End bp | 4540112 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638120447 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_735922 |
|---|
| Protein GI | 113972129 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTACCG CAAAATCCAC CGCACTCGCG CTCCTGTTGA ATGGCACCAA GAATCGCCAG
CTGCTCGCGC TTGCCCTGCC GATGATCCTC TCCAATATCA CGGTTCCGCT GTTGGGATTG
GTCGATACGG CCGTCATCGG GCATTTAAGT GACGCCTATT ATTTAGGGGG CGTCGCACTC
GGGTCAACGA TTATCACATT AATCATTTGG TTATTAGGCT TTTTACGGAT GGCGACCACC
GGATTGGTCG CACAGGCCTA TGGCGCAAAC GATACCGCGC GCCAATTAAA GTTGCTGGTC
CAAGGCGCCA TGTTGGCAAC TGGGCTGGGT ATCGCGGTGA TCCTATTACA GATCCCGATA
CTGAATTTAG CGCTCGGCCT CTCCGAGGCG AGTGTGGAAG TGGAGCGTTA TTGCCGAGAA
TATTTTCAAG TCCGAGTCTG GTCGACGCCA TTCGCCCTGC TCAATTTAGT GATGCTCGGC
TGGCTCCTTG GCAGACAACA GCCCAAGGCG GCCATGTGGC AGCTCATCTT CGCCAACTTA
GCCAATATTA TCCTCGATGT GTTGTTCGTC TTGGGTTTAG GCTGGGGAGT CAAAGGGGCC
GCACTTGCCT CAGTATGTGC GGATATCACC GCCTTTAGCG TTGCGCTCTA CATGGTATTA
CAACAGCTTA AGTTAATACC TCGATTCCAA TTTGCCGATA TCAGAGTTCA CCTGAACTTG
TCGGGTTACG GCCAGCTGCT CAGGCTCAAT ACCGATATTT TTATCCGCAG CCTATGCCTG
CAAACCGCCT TCGCCTTTAT GACTTTTCAC GGTGCAGGCC TTGGGGATAA TACGGTCGCA
GCCAATGCGG TCTTATTGAA TTTACTATTA TTAATCGCCT ACGCCCTCGA TGGCATAGCC
TATTATGCCG AGGCGGAAGT GGGCAAGGCC TACGGGCAAC AACGCACACA GCCACTGCGT
GAAGCAGTAC TCCTCGCCTG GTGTTGGTCA GCCATCACAG CCCTAGGTTT TAGCCTGATA
TTTTATCTTT TTGGAGACCA TATCATCGGG CTGCTAACCA ATATTGATGA GGTGAGAACC
ACAGCGCAAA TTTATCTGCC TTGGCTGATA TTACTGCCGC TTTGGTCTTT TAGTTCCTAT
CTGTTTGATG GGGTTTATAT TGGCGCCGCT AAGGGCAAAG TCATGCGCAA TAGCATGATT
ATCGCCACAT TTGGCGCCTT CTTCCCGACA TGGTATTTGC TGCAATCGCT GTTGCCTTCC
GAACAAGCTA ACCATGCACT GTGGGCGGCC ATGACGGCCT TTATGCTAGC ACGCAGCCTC
ACCCTAGCGA CACATTACCG CTTTAGCAAG GCATTTATTC TTAATTAG
|
|---|
| Protein sequence | MTTAKSTALA LLLNGTKNRQ LLALALPMIL SNITVPLLGL VDTAVIGHLS DAYYLGGVAL
GSTIITLIIW LLGFLRMATT GLVAQAYGAN DTARQLKLLV QGAMLATGLG IAVILLQIPI
LNLALGLSEA SVEVERYCRE YFQVRVWSTP FALLNLVMLG WLLGRQQPKA AMWQLIFANL
ANIILDVLFV LGLGWGVKGA ALASVCADIT AFSVALYMVL QQLKLIPRFQ FADIRVHLNL
SGYGQLLRLN TDIFIRSLCL QTAFAFMTFH GAGLGDNTVA ANAVLLNLLL LIAYALDGIA
YYAEAEVGKA YGQQRTQPLR EAVLLAWCWS AITALGFSLI FYLFGDHIIG LLTNIDEVRT
TAQIYLPWLI LLPLWSFSSY LFDGVYIGAA KGKVMRNSMI IATFGAFFPT WYLLQSLLPS
EQANHALWAA MTAFMLARSL TLATHYRFSK AFILN
|
|---|
| |