Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3802 |
Symbol | |
ID | 4254365 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 4538745 |
End bp | 4540112 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638120447 |
Product | MATE efflux family protein |
Protein accession | YP_735922 |
Protein GI | 113972129 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTACCG CAAAATCCAC CGCACTCGCG CTCCTGTTGA ATGGCACCAA GAATCGCCAG CTGCTCGCGC TTGCCCTGCC GATGATCCTC TCCAATATCA CGGTTCCGCT GTTGGGATTG GTCGATACGG CCGTCATCGG GCATTTAAGT GACGCCTATT ATTTAGGGGG CGTCGCACTC GGGTCAACGA TTATCACATT AATCATTTGG TTATTAGGCT TTTTACGGAT GGCGACCACC GGATTGGTCG CACAGGCCTA TGGCGCAAAC GATACCGCGC GCCAATTAAA GTTGCTGGTC CAAGGCGCCA TGTTGGCAAC TGGGCTGGGT ATCGCGGTGA TCCTATTACA GATCCCGATA CTGAATTTAG CGCTCGGCCT CTCCGAGGCG AGTGTGGAAG TGGAGCGTTA TTGCCGAGAA TATTTTCAAG TCCGAGTCTG GTCGACGCCA TTCGCCCTGC TCAATTTAGT GATGCTCGGC TGGCTCCTTG GCAGACAACA GCCCAAGGCG GCCATGTGGC AGCTCATCTT CGCCAACTTA GCCAATATTA TCCTCGATGT GTTGTTCGTC TTGGGTTTAG GCTGGGGAGT CAAAGGGGCC GCACTTGCCT CAGTATGTGC GGATATCACC GCCTTTAGCG TTGCGCTCTA CATGGTATTA CAACAGCTTA AGTTAATACC TCGATTCCAA TTTGCCGATA TCAGAGTTCA CCTGAACTTG TCGGGTTACG GCCAGCTGCT CAGGCTCAAT ACCGATATTT TTATCCGCAG CCTATGCCTG CAAACCGCCT TCGCCTTTAT GACTTTTCAC GGTGCAGGCC TTGGGGATAA TACGGTCGCA GCCAATGCGG TCTTATTGAA TTTACTATTA TTAATCGCCT ACGCCCTCGA TGGCATAGCC TATTATGCCG AGGCGGAAGT GGGCAAGGCC TACGGGCAAC AACGCACACA GCCACTGCGT GAAGCAGTAC TCCTCGCCTG GTGTTGGTCA GCCATCACAG CCCTAGGTTT TAGCCTGATA TTTTATCTTT TTGGAGACCA TATCATCGGG CTGCTAACCA ATATTGATGA GGTGAGAACC ACAGCGCAAA TTTATCTGCC TTGGCTGATA TTACTGCCGC TTTGGTCTTT TAGTTCCTAT CTGTTTGATG GGGTTTATAT TGGCGCCGCT AAGGGCAAAG TCATGCGCAA TAGCATGATT ATCGCCACAT TTGGCGCCTT CTTCCCGACA TGGTATTTGC TGCAATCGCT GTTGCCTTCC GAACAAGCTA ACCATGCACT GTGGGCGGCC ATGACGGCCT TTATGCTAGC ACGCAGCCTC ACCCTAGCGA CACATTACCG CTTTAGCAAG GCATTTATTC TTAATTAG
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Protein sequence | MTTAKSTALA LLLNGTKNRQ LLALALPMIL SNITVPLLGL VDTAVIGHLS DAYYLGGVAL GSTIITLIIW LLGFLRMATT GLVAQAYGAN DTARQLKLLV QGAMLATGLG IAVILLQIPI LNLALGLSEA SVEVERYCRE YFQVRVWSTP FALLNLVMLG WLLGRQQPKA AMWQLIFANL ANIILDVLFV LGLGWGVKGA ALASVCADIT AFSVALYMVL QQLKLIPRFQ FADIRVHLNL SGYGQLLRLN TDIFIRSLCL QTAFAFMTFH GAGLGDNTVA ANAVLLNLLL LIAYALDGIA YYAEAEVGKA YGQQRTQPLR EAVLLAWCWS AITALGFSLI FYLFGDHIIG LLTNIDEVRT TAQIYLPWLI LLPLWSFSSY LFDGVYIGAA KGKVMRNSMI IATFGAFFPT WYLLQSLLPS EQANHALWAA MTAFMLARSL TLATHYRFSK AFILN
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