| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3697 |
|---|
| Symbol | aroB |
|---|
| ID | 4254260 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 4412544 |
|---|
| End bp | 4413623 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638120339 |
|---|
| Product | 3-dehydroquinate synthase |
|---|
| Protein accession | YP_735817 |
|---|
| Protein GI | 113972024 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0337] 3-dehydroquinate synthetase |
|---|
| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0194599 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.984962 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAC AAATTCAGGT TGATTTAGGT GAACGTAGTT ACCCCATTTA CATTGGCCAG
AGTTTGATGA GTGATAGCGA GACCTTGTCT CGCTACCTGC TGAAAAAACG TATCCTTATC
GTCACCAATG AAACTGTCGC GCCTTTGTAT CTCAAACAAA TACAAGACAC GATGGCTTCG
TTTGGTGAGG TATCTAGCGT CATCCTTCCC GATGGCGAGC AATTTAAAGA TTTAACGCAT
TTAGATTCTA TTTTTACGGC TTTGCTGCAA CGCAATTATG CCCGTGATTC AGTGCTGGTG
GCTCTCGGTG GTGGAGTTAT TGGTGACATG ACGGGTTTTG CTGCAGCCTG TTACCAACGT
GGTGTCGATT TTATTCAAAT TCCGACCACG CTATTATCAC AAGTAGATTC CTCTGTTGGC
GGGAAAACCG CCGTTAATCA TCCGCTTGGC AAAAATATGA TCGGGGCTTT TTATCAGCCA
CAGATCGTCA TTATCGATAC TGAATGTTTA CAGACCTTGC CTGCGCGAGA ATTCGCTGCG
GGGATGGCAG AAGTCATTAA GTATGGCATC ATGTGGGATG CTGAGTTTTT TCAATGGCTT
GAGAACAATG TTCAGGCATT GAAAAGCCTA GATACTCAAG CTTTGGTCTA CGCGATCTCT
CGCTGCTGTG AGATTAAAGC CGATGTCGTG AGCCAGGATG AGACCGAGCA GGGCGTCCGC
GCATTATTAA ACCTTGGGCA TACCTTTGGA CATGCGATCG AAGCCGAGAT GGGCTATGGT
AATTGGCTGC ATGGTGAAGC GGTTGCGGCT GGCACAGTCC TTGCTGCACA AACGGCTAAG
TCCATGGGAT TGATTGATGA GTCAATTGTT CGTCGTATTG TGCAATTGTT CCACGCTTTC
GATCTGCCAA TAACAGCGCC GGAATCGATG GATTTCGACA GTTTTATTAA ACATATGCGT
CGCGATAAGA AAGTCTTAGG TGGTCAGATC CGGCTGGTAC TCCCGACGGC CATTGGTCGA
GCTGATGTCT TTAGCCAAGT TCCGGAATCT ACCCTAGAAC AGGTTATCTG CTGCGCATAA
|
|---|
| Protein sequence | MTQQIQVDLG ERSYPIYIGQ SLMSDSETLS RYLLKKRILI VTNETVAPLY LKQIQDTMAS
FGEVSSVILP DGEQFKDLTH LDSIFTALLQ RNYARDSVLV ALGGGVIGDM TGFAAACYQR
GVDFIQIPTT LLSQVDSSVG GKTAVNHPLG KNMIGAFYQP QIVIIDTECL QTLPAREFAA
GMAEVIKYGI MWDAEFFQWL ENNVQALKSL DTQALVYAIS RCCEIKADVV SQDETEQGVR
ALLNLGHTFG HAIEAEMGYG NWLHGEAVAA GTVLAAQTAK SMGLIDESIV RRIVQLFHAF
DLPITAPESM DFDSFIKHMR RDKKVLGGQI RLVLPTAIGR ADVFSQVPES TLEQVICCA
|
|---|
| |