| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3574 |
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| Symbol | |
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| ID | 4254138 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4277074 |
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| End bp | 4278456 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638120217 |
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| Product | UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase |
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| Protein accession | YP_735695 |
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| Protein GI | 113971902 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
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| TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00218692 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATCCCAA TTTCCCTCGA GGCGCTAAGC CAACACTTAA GTGCGCATCG AGTCGGTGAC
GATGTCACCA TCCAAGCATT AAGCAGCGAT AGCCGTAAAA TCGGCCCAGC GACTCTGTTT
GTCGCCTTAA AGGGCGAGCG TTTCGATGGC CATGATTTTG CGGCCACGGC AATTGAAAAT
GGTGCCGTTG CACTGCTGGT TGAACGTGAA TTGGCCTTCG ATGTGCCGCA GCTTATTGTT
GCCGATTGCC AAAAGGCCAT GGGCGCGATT GGCGCCTATG TACGTGACCA AGTGGATCCC
ATTTGTGTGG CCTTAACTGG CTCCAATGGC AAAACCAGCG TGAAAGAAAT GATCGCCACA
ATTTTATCGG CGAAGCATCA AGTGCTTTAC ACCGCTGGCA ATTTTAATAA TGAAATCGGT
GTGCCACTCA CCTTGCTGCG CTTAACGCCC GAGGATAAAT ACGGGGTGTT TGAGCTTGGC
GCTAACCATA AAGGTGAGAT TGATTACACC TCGAGTTTGG TGCGTCCTCA CGTAGCGTTA
GTCAACAACG TTGGCAGCGC TCACTTAGAA GGCTTTGGCT CACAGGCGGG TGTCGCTCAG
GCCAAATCGG AAATCTACAA CCATCTGCAA TCCGGCGGCA CGGCAATTAT CAATGCCGAT
GATGCCTTTG CCGATGTGAT GCGGGTGAAA GCGAAACAAT ATAAGCAATT AAGCTTCTCC
CAGCAGGAAG GCGCGGCTAA ACGTCAAATC GATGTGATTG CGACTGGCCA CAAAGCCAAT
AGCGAAGGTT GCTATCGTTT TATCCTCAAT TACGCGGGAG AGTCCTGCGA AGTGACTCTG
CCTCTCGCGG GTCGTCACCA AGTTAGCAAC GCGCTGGCTG CGGCAAGTGT TTGTATTGCT
TTAGGATTAA GCCTTAAAGA AATCGCCGAA GGCTTGAGCC AGTTGACCCC AGTTAAGGGA
CGCATGCAGC CAACTCAATT AGGACGTATT CGTCTAATCG ATGATAGCTA TAACGCCAAT
CCCGTGTCAG TGGGAGCGGC TATCGCTTGG TTAAAGGAAA TTTCTGAAAA TCGCTGTTTG
GTACTGGGAG ATTTGGGCGA ATTAGGCGAC AATGCGCCCC TTTTACACGC TGAACTGGGA
CAACTGGCAA AGCAACAGGG AATCGATGCT CTGTTCTGTA CCGGCACCTT AACTCAGCAC
ACTAGCCAAG CTTTCGGGGC GGAGCACCAT GACAGCGTGG CGACGTTAGT AGAAAAACTC
ATAAAACACA TCAACCAGTT GCCGGGACAG GTGACGGTTT TAGTTAAAGG TTCACGTAGT
GCCGCAATGG AGCGGGTCGT GGATGGCCTA ACAGTAGCCT TCGGGCGTGG GGAGTTAGTG
TAG
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| Protein sequence | MIPISLEALS QHLSAHRVGD DVTIQALSSD SRKIGPATLF VALKGERFDG HDFAATAIEN
GAVALLVERE LAFDVPQLIV ADCQKAMGAI GAYVRDQVDP ICVALTGSNG KTSVKEMIAT
ILSAKHQVLY TAGNFNNEIG VPLTLLRLTP EDKYGVFELG ANHKGEIDYT SSLVRPHVAL
VNNVGSAHLE GFGSQAGVAQ AKSEIYNHLQ SGGTAIINAD DAFADVMRVK AKQYKQLSFS
QQEGAAKRQI DVIATGHKAN SEGCYRFILN YAGESCEVTL PLAGRHQVSN ALAAASVCIA
LGLSLKEIAE GLSQLTPVKG RMQPTQLGRI RLIDDSYNAN PVSVGAAIAW LKEISENRCL
VLGDLGELGD NAPLLHAELG QLAKQQGIDA LFCTGTLTQH TSQAFGAEHH DSVATLVEKL
IKHINQLPGQ VTVLVKGSRS AAMERVVDGL TVAFGRGELV
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