| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3565 |
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| Symbol | lpxC |
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| ID | 4254129 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 4266474 |
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| End bp | 4267394 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638120208 |
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| Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
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| Protein accession | YP_735686 |
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| Protein GI | 113971893 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
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| TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000120439 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000000000460363 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGATATTTC AACGAACTGT TCAAAAAATG GTGAAGGCTA CTGGAGTCGG TTTGCACTCT
GGGAACAAGG TCACCTTGAG CATTATGCCC GCACCAGTCA ATACAGGGAT CGTACTCGTG
CGTACCGACA TGAATCCTGC CGTTGCTATT CCTGCAAAGG CGGAACAAGT TCGCGAAACC
ACTATGTGCA CGGCACTTGT CAATGACGAA GGTATTCGTA TTTCGACTAT TGAGCATCTG
TTTGCAGCCT TAGCGGGTTT AGGCATTGAT AACGCCGTAA TCGAAGTGGA CGCGCCTGAA
ATCCCAATTA TGGATGGCAG TGCGAGCCCA TTTGTCTTCT TACTTCAGTC TGCAGGTATT
AAAGAGCAGG CTGCGCCTAA GAAGTACTTA AAGATTAAAC GCCCTGTGCG TGTTGAAGAC
GGTGATAAGT GGGCCGAGCT GAAGCCATTC AAAGGCTTTA GAGTCAACTT CAAAATTGAC
TTTGCTCACC CTGAAATTGC TCGTAGTCAG CAGCACGTGG TGATGGACTT CTCTACTTCT
GCTTTTGTTA AAGACATTAG CCGTGCCCGT ACTTTTGGTT TTATGCGTGA TATTGAGTAT
CTGCGTGCGA ACAACCTAGC ATTAGGTGGC AGCATGGAAA ACGCGGTTGT ACTTGATGAA
TATCGCGTCC TCAACCCCGA CGGCCTGCGT TATGAGGATG AGTTCGTTAA GCACAAAATT
TTAGATGCGT TTGGTGATCT CTACGTGGCA GGACACGCCA TTCTTGGTGA GTTTACTGCC
TATAAAACGG GTCATGCACT GAATAACCAA TTAGTGCGAG CCTTATTGGC GCAGCAGGAT
GCATGGGAGC TGGTGAGCTT TGAGAAAGAA GCCGATGTTC CCGTCAGCTT TACTGTGCCA
GGTGGCGCGG TTTACGCTTA A
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| Protein sequence | MIFQRTVQKM VKATGVGLHS GNKVTLSIMP APVNTGIVLV RTDMNPAVAI PAKAEQVRET
TMCTALVNDE GIRISTIEHL FAALAGLGID NAVIEVDAPE IPIMDGSASP FVFLLQSAGI
KEQAAPKKYL KIKRPVRVED GDKWAELKPF KGFRVNFKID FAHPEIARSQ QHVVMDFSTS
AFVKDISRAR TFGFMRDIEY LRANNLALGG SMENAVVLDE YRVLNPDGLR YEDEFVKHKI
LDAFGDLYVA GHAILGEFTA YKTGHALNNQ LVRALLAQQD AWELVSFEKE ADVPVSFTVP
GGAVYA
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