Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3483 |
Symbol | |
ID | 4254049 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 4165857 |
End bp | 4167617 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638120121 |
Product | type II secretion system protein E |
Protein accession | YP_735606 |
Protein GI | 113971813 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACCCA GATTAAAGAT GCGTTTGGGC GATCTGTTAG TTCAAGAATC GATTATTACC GAAGAGCAGC TACAACAAGC TTTGGGTGAG CAGCGTAAGA CAGGGCATAA GCTCGGCCGC ACCCTGATTG AGCTGCGCTC TATTACCGAA ACCCAACTGC TGCAATTTTT GTCGCAGCAG CTCAATCTGC CGCTGCTGGA TATCAGCAAA CGCCCCATCC CCGCCGAAGT GGTGAGCCTT ATCCCCGAGG TGCAAGCGCG GCGTTTTCGC GCCCTCGCGG TGGAAGATCG GGGGGATACG GTATTAGTGG CCATGAGCGA CCCGGCGGAC TTGCAGGCGC TCGATCATTT AGAAATTTTA ATCGCACCGA AAAAGCTCAG TGTTGCGGTG GCCCCCGAGC AGCAATTACT ACAAGCCTTC GATAACCTGT ATCGTCGCAC CGACCAAATC GCGCAAATCG CCGGTAAGCT CGAAGAGGAA TATGCCGCAG ATCAAATGTT TGATCTGGCG AGCCTGACCT CAAGCGATAG CGATAATGAA ACCACAGTTG TTAAGCTGCT GCAGTCGATT TTTGAAGATG CGGTGCAAAT GCGTGCCTCG GATATTCATA TTGAGCCCGG CGAAAAAGCC CTGCGGATCC GCCAACGTAT CGATGGCCAG TTACACGAGA CCATTCTAAA TGAAGTGAAT ATCGCGGCGG CCTTAGTCTT GCGGCTTAAG CTTATGGCTG GGCTAGATAT TTCTGAAAAA CGTCTGCCGC AGGACGGTCG TTTCCATATG GAAATTAAGG GCCACAAGAT TGACGTGCGT ATGTCGACTA TGCCGATTTA CCACGGCGAA TCAGTGGTAA TGCGTCTACT TGACCAATCC GCAGGCTTAT TGACCTTAAA TGAGACAGGG ATGCCGCCGC ATATTTTGGC GCGTATCCGT AAGCAGATTA AACGCCCCCA CGGCATGTTG CTGGTGACTG GGCCTACGGG TAGCGGTAAA ACCACCACCT TGTATGGCAT CTTAAGTGAG CTCAATACTG CGGATCGCAA AATTATTACG GTAGAAGATC CGGTCGAATA CCAATTGCCA AGGATCAACC AAGTTCAAGT TAACCATAAG ATTGGACTCG ATTTTTCGAA CGTGCTGCGC ACGACTTTGC GTCAAGACCC GGACATTATC ATGGTCGGTG AGATGCGTGA CCAAGAAACG GTGGAGATTG GTCTTCGGGG CGCACTTACG GGTCACTTTG TGTTGTCCAC CTTGCACACT AACGATGCGG TGACCAGCGC GCTACGTTTG CTCGATATGG GCGCGGCCAG TTACTTAGTG GCGAGTGCGC TAAGGGTGAT TATTGCCCAG CGCTTAGTGC GCCGCGTGTG CCATAACTGC GGGGTGGAAT ATCAACCTAC GGCGCAGGAA AAAGCCTGGC TGAATAGTGT GAGTCGGCAG GACTTTTCAT CGGCCAAGTT CCGCATTGGC ACTGGCTGCC AAAGCTGTAA CGGCAGTGGT TATCGCGGCC GTATCGGTAT TTTTGAGATC CTCGAATTGG ATGAAAAGAT GATCGATGCG ATGCGTACCG GTAACCCACA GGATTTTGCC CGTGCAGCCC TGCAAAGCCC TAATTTTACC CCGCTCGCCG AGTCGGCATT GCAATATTTA AGCGAGGGCA TGACGACCAT TGAAGAGGTG GCTAAGCTTG TTGAGGATGT GAGTGAGTCA CAGGTGCCAC TCTCGCGGGA TATTATCAGT CAGCAAGGCG TTGAGGCGTA A
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Protein sequence | MKPRLKMRLG DLLVQESIIT EEQLQQALGE QRKTGHKLGR TLIELRSITE TQLLQFLSQQ LNLPLLDISK RPIPAEVVSL IPEVQARRFR ALAVEDRGDT VLVAMSDPAD LQALDHLEIL IAPKKLSVAV APEQQLLQAF DNLYRRTDQI AQIAGKLEEE YAADQMFDLA SLTSSDSDNE TTVVKLLQSI FEDAVQMRAS DIHIEPGEKA LRIRQRIDGQ LHETILNEVN IAAALVLRLK LMAGLDISEK RLPQDGRFHM EIKGHKIDVR MSTMPIYHGE SVVMRLLDQS AGLLTLNETG MPPHILARIR KQIKRPHGML LVTGPTGSGK TTTLYGILSE LNTADRKIIT VEDPVEYQLP RINQVQVNHK IGLDFSNVLR TTLRQDPDII MVGEMRDQET VEIGLRGALT GHFVLSTLHT NDAVTSALRL LDMGAASYLV ASALRVIIAQ RLVRRVCHNC GVEYQPTAQE KAWLNSVSRQ DFSSAKFRIG TGCQSCNGSG YRGRIGIFEI LELDEKMIDA MRTGNPQDFA RAALQSPNFT PLAESALQYL SEGMTTIEEV AKLVEDVSES QVPLSRDIIS QQGVEA
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