Gene Shewmr4_3458 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3458 
Symbol 
ID4254024 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp4136103 
End bp4137434 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content50% 
IMG OID638120096 
Productamino acid permease-associated region 
Protein accessionYP_735581 
Protein GI113971788 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0531] Amino acid transporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCAAC AAAATCCAGG CTTAAAGCAA AGCCTTAGTC TGTGGCAAGT GGTTGTGATG 
GGATTAGCCT ATCTCACGCC TATGGCCGTG TTTGACACCT TTGGCATTGT CTCCGAGATC
ACCTCAGGCC ATGTGGCCAC TTCTTACCTG CTCGCGTTAG CGGGGATCCT GTTTACCGCC
TTTAGCTACG GTCACTTAGT ACGTAAATAT CCCTATGCTG GCTCGGCCTA TACCTATGCG
CAAAAAACCT TTAGCCCGAA TGTCGGCTTT ATGGTGGGCT GGTCATCGCT GCTCGATTAT
ATGTTTATGC CGATGATCAA TATGTTGCTG GCAAAGATTT ACCTCACGGC CATGTTCCCT
AACGTCGAAC CGTGGATTTT TATCTTTGGT TTAGTCGCTG TAATGACGGT ATTAAACCTG
AGGGGCATAG ATTTAGTGGC CAATTTTAAT GGCGTTATCG TATTCGCCCA GATAGCCATT
ATCTTAGTGT TTATCGGCCT AATGGCCCAC AGCCTGTCCC TTGGCGAAGG TGAAGGTGTG
ATTGCCAGTG TGCGTCCATT CTATTCCGAA GAGATAAGCC TTGCGCCGCT GTTTACTGGC
GCGACTATTC TGTGTTTCTC CTTCTTAGGT TTCGATGGCT TAAGTTCGTT GAGTGAAGAA
ACCAAGGACG CTAAGCGAGT CATCCCCCGC GCTATCGTGC TGACGGCGCT GATTGGCGGC
GTGATTTTTG TCAGCGTGTC CTATTTCTTA CAGCTGTTTT TCCCTGATAT TTCTCGCTTC
CAGCAGTTAG ATGCTGTGCT GCCTGAGATA GCCCTGTATG TGGGTGGTAA TTTATTCCAG
TCAGTGGTGC TGGTGGCCAC CACCATTGCG GTGTTGGCCT CGGGCATGGC CGCCCATGCG
GGTGTGGCAC GTATTCTCTA CGTGATGGGT CGCGACAATA TGCTGCCCAA TAAAGGCTTT
GGTTATATTC ACCCCAAATG GCGCACGCCG GCATTTAACG TGATTCTGGT GGGATTACTG
GCGCTTTCGG CGGTGTCCTT CGATCTCGAA ATGGCACTGG CGCTCGTCAA CTTCGGGGCG
CTGGTGGCCT TTACCTTTGT GAACCTGTCG GTAATAGTGC AGTTTTATAT TAAAGAGAAA
CGCAACCAAT CCTTGAAAGA CCACTTTCAA TACTTCGTCT TACCCTTGTG CGGCGCGGCG
ACTATTGGTG TGCTGTGGCT AAACCTTGAA CCTCAGTCCC TAGAGCTTGG CTTGATTTGG
GCGGCAGTTG GGGTCTTGTA CTTGGCGCTG CGAAGCCTGC GTTTACGCAA GACAGTAGAG
TTACAGAATT AA
 
Protein sequence
MSQQNPGLKQ SLSLWQVVVM GLAYLTPMAV FDTFGIVSEI TSGHVATSYL LALAGILFTA 
FSYGHLVRKY PYAGSAYTYA QKTFSPNVGF MVGWSSLLDY MFMPMINMLL AKIYLTAMFP
NVEPWIFIFG LVAVMTVLNL RGIDLVANFN GVIVFAQIAI ILVFIGLMAH SLSLGEGEGV
IASVRPFYSE EISLAPLFTG ATILCFSFLG FDGLSSLSEE TKDAKRVIPR AIVLTALIGG
VIFVSVSYFL QLFFPDISRF QQLDAVLPEI ALYVGGNLFQ SVVLVATTIA VLASGMAAHA
GVARILYVMG RDNMLPNKGF GYIHPKWRTP AFNVILVGLL ALSAVSFDLE MALALVNFGA
LVAFTFVNLS VIVQFYIKEK RNQSLKDHFQ YFVLPLCGAA TIGVLWLNLE PQSLELGLIW
AAVGVLYLAL RSLRLRKTVE LQN