Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3424 |
Symbol | |
ID | 4253990 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 4094664 |
End bp | 4096532 |
Gene Length | 1869 bp |
Protein Length | 622 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638120062 |
Product | DEAD/DEAH box helicase domain-containing protein |
Protein accession | YP_735547 |
Protein GI | 113971754 |
COG category | [J] Translation, ribosomal structure and biogenesis [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG0513] Superfamily II DNA and RNA helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCATCCA GTGAAAGAAC TTTCCGTGAA CTCGGCTTGT CCGAGAATTT GTTGCGTGCT CTTGACGAGC TAGGTTACGA AAAACCAACG CCAATCCAAT CAGCCAGTAT TGACCCATTA ATGGCTGGCA AAGATATTTT AGGTCAGGCA CAAACAGGCA CAGGTAAAAC TGGCGCCTTC GCCCTGCCCC TGCTCAACAA AGTGACCAGC CAAGCTGTTC CACAAATCCT AGTATTAGCG CCAACCCGCG AATTAGCGGT GCAAGTAGCA GAAGCTTTCA GCAGCTACGC GAAATTTATG AAAGGTTTCC ATGTACTGCC AATCTATGGC GGTCAGAGCA TGCATCAGCA ATTAAACGCC CTGAAGCGTG GTCCACAGGT TATCGTGGGT ACACCGGGTC GTGTTATGGA CCATATGCGC CGTGGCACCT TAAAGCTGGA AACCCTGCAA GCGCTGGTAC TCGACGAAGC CGACGAAATG TTAAAAATGG GCTTTATCGA CGATATCGAA TGGATTCTGG AACACACGCC AGAACAGCGC CAACTGGCAC TGTTCTCGGC CACTATGCCA GAACAAATCA AGCGTGTTGC TAACAAGCAC TTAAAAGATG CGACTAACAT CAGCATCGCT GCGAGCCACA CCACAGTTGA CTCTATCGAG CAACGTTTCG TGCAAGTGTC TCAGCACAAC AAGTTAGAAG CCTTAGTACG CGTATTAGAA GTTGAAAATA CTGAAGGTAT TATCATCTTC GTTCGTACCC GTAACTCATG CGTTGAATTA GCAGAAAAAC TCGAAGCCCG CGGCTACGCT TCATCACCAC TGCACGGTGA TATGAACCAG CAAGCCCGTG AGCGTGCGGT TGAGCAGCTG AAAAGCGGCA AGCTAGACAT TCTGATCGCG ACCGACGTTG CGGCTCGTGG TCTGGACGTT GAGCGTATCG GCCACGTAGT AAACTACGAT ATCCCTTACG ATACTGAAGC TTACGTACAC CGTATCGGTC GTACTGGCCG TGCTGGCCGT ACGGGCATGG CGATTCTGTT CGTGACCAGC CGTGAAATGC GTATGCTGCG CACCATCGAG CGCGCAACCA ACAGCCGTAT TTCACCAATG AAGGTACCAA GCCCAGAGAC GGTTGCAGAA CGCCGCCTGT CTCGCTTAGG TGAGCAATTA GCGCAAACCA TGACACAAGA TCTGGACTTT ATGCGCGAAG CAGTTGCCCA GTTATGCCAA CAACTGGAAG TGGATACCGA TCTGCTGGCC GCAGCCCTGC TGCACCAAGT TCAGCAAGAA CGCCCACTGC AATTACCTGC GATTCAAGAG CGTACCCGCG ATGAACGCAA TGAGCGCAGC GAACGTGGTG CTGAACGTGG CGAGCGCGGT GAACGTCGCA GCCGTGAATC ACGCCCACTG CCAGCTAGCC TTGGCAGCGC CGAAGCGTTA AAAGACAACC CAGATCTGAA GATGTGCCGT TATGTTATCG ATGTAGGTCG TGACAATGGC GTGGGTGTGG GCAACATCGT TGGCGCTATT GCAAACGAAG CTAACATCGA CAGTCGTTAC ATTGGTGCTA TCCAGTTATA CGATGCAGTG ACTACCGTTG ACCTGCCAGA CGGCATGCCA AAAGAAGTAC TGCAGCATCT GAAGAAAGTG CGCGTATGTG GCAAGCCACT GAACATCCGT GAAGCTGGCG ATCAAGTCTT CGTAGACTCA GGCCGTGGCG CACGTAGCGA CCGTCGTCCA CGTGGTGATC GTCCAATGGG TGAGCGTAAA CCACGTTCAG CCTCTGGCGA CAAACCATTT GCTGACCGCA AACCACGTTC AGACAAGCCA GCAGGCGAGC GTAGACCACG TAAACCACGC GAAGAGTAA
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Protein sequence | MSSSERTFRE LGLSENLLRA LDELGYEKPT PIQSASIDPL MAGKDILGQA QTGTGKTGAF ALPLLNKVTS QAVPQILVLA PTRELAVQVA EAFSSYAKFM KGFHVLPIYG GQSMHQQLNA LKRGPQVIVG TPGRVMDHMR RGTLKLETLQ ALVLDEADEM LKMGFIDDIE WILEHTPEQR QLALFSATMP EQIKRVANKH LKDATNISIA ASHTTVDSIE QRFVQVSQHN KLEALVRVLE VENTEGIIIF VRTRNSCVEL AEKLEARGYA SSPLHGDMNQ QARERAVEQL KSGKLDILIA TDVAARGLDV ERIGHVVNYD IPYDTEAYVH RIGRTGRAGR TGMAILFVTS REMRMLRTIE RATNSRISPM KVPSPETVAE RRLSRLGEQL AQTMTQDLDF MREAVAQLCQ QLEVDTDLLA AALLHQVQQE RPLQLPAIQE RTRDERNERS ERGAERGERG ERRSRESRPL PASLGSAEAL KDNPDLKMCR YVIDVGRDNG VGVGNIVGAI ANEANIDSRY IGAIQLYDAV TTVDLPDGMP KEVLQHLKKV RVCGKPLNIR EAGDQVFVDS GRGARSDRRP RGDRPMGERK PRSASGDKPF ADRKPRSDKP AGERRPRKPR EE
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