Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3399 |
Symbol | |
ID | 4253965 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 4057387 |
End bp | 4058745 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638120037 |
Product | MATE efflux family protein |
Protein accession | YP_735522 |
Protein GI | 113971729 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00107141 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCAAGACA GACACGGGCT GCTTAGCGCG CCAATTGGTC GTGTACTGCT CAACATGAGC CTCCCTAACT TGATTGGCAT TATGACCATT CTCGGGTTTA GCCTCGCTGA CACTTTTTTT ATCAGCCAAT TAGGGACAGA AGCCTTAGCG GCGATCAGTT TTACCTTCCC TGTCACTTTG ATTATTTCCA GCATTGCCAT TGGCATTGGT GCCGGGGTAT CCACGAATCT TGGCCGATTG ATTGGCTCGG GTAACGCCAC GCGGGCCAAG GTGTTTTTAC ACGATGCGCT GCTGCTGACC TTTATCCTGA TCGCCAGTTT ATCCGCCCTC GGCAGTATTT TTATCACACC ACTTTTTAGC TTGCTCGGCG CCAATGACAC CAGTCTGCCG CTCATTCATG ACTATATGAT GTATTGGTAT GTGGGCGCGC CGCTGTTGGT GTTATTGATG GTAGGCAACC AAGGCTTACG CTCAACCGGG GATACTCGCT CACCCGCAAT GATTATGACG CTGGCGGCGA TTATTAACTT GATCCTCGAC CCTTTGCTTA TTTTCGGTAT TGGGCCTTTT CCACGCTTAG AGATCCAAGG AGCGGCGATT GCCACCCTGT TCTCGTGGCT TATTGCCCTG TCACTCTCGG GCTATTTGCT GATTATTAAG CGCCGAATGC TTGAACGGGC CGCATTTGAT ATCGATAGAA TGCGCGCTAA CTGGAGCAAA CTCGCCCATA TCGCCCAGCC AGCGGCCCTG ATGAATTTAA TTAATCCACT CGCCAATGCG GTGATTATGG CGATGCTGGC CCATATCGAC CACAGCGCCG TTGCCGCCTT TGGTGCGGGC ACGCGCTTAG AATCCGTTCT CTTGATTGTG GTGATGGCGC TCTCCTCGAG CCTAATGCCG TTTATCGCGC AAAATCTTGG TGCTGGCCAA ACCCAAAGGG CGAAACAGGC TTTGCTGTTA TCGCTTAAAT TTATCTTAGT ATTCCAGACC TTACTCTATA TTCCGCTGGC GTTTTTCGCC CAGCCACTGG CGAGTTTATT CAGTACCGAT CCACAGGTGT TAGAGTGGTT AAGCTTCTAT ATTCTGGTGC TGCCCTGCGC TTACGGCCCC TTAGGCATAG TGATTATCTT TGCCACGGCG CTCAATGCGT ACCACAGACC CATGAGCTCG CTAGTGATTA ACCTGTGCCG TTTAGTGCTG CTGATGCTGC CGCTGGCGGC GCTGGGATCT TATATCGATG GCGTGAAAGG CTTATTGCTC GCACTCCCCA TCACCAACCT CTTGATGGGG ATTGCCTGTT ATTATCTAGC CCAAAGGATT TGTGAACCTA CCAAGGTCAC GACCGCCGAT GCTATCTAA
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Protein sequence | MQDRHGLLSA PIGRVLLNMS LPNLIGIMTI LGFSLADTFF ISQLGTEALA AISFTFPVTL IISSIAIGIG AGVSTNLGRL IGSGNATRAK VFLHDALLLT FILIASLSAL GSIFITPLFS LLGANDTSLP LIHDYMMYWY VGAPLLVLLM VGNQGLRSTG DTRSPAMIMT LAAIINLILD PLLIFGIGPF PRLEIQGAAI ATLFSWLIAL SLSGYLLIIK RRMLERAAFD IDRMRANWSK LAHIAQPAAL MNLINPLANA VIMAMLAHID HSAVAAFGAG TRLESVLLIV VMALSSSLMP FIAQNLGAGQ TQRAKQALLL SLKFILVFQT LLYIPLAFFA QPLASLFSTD PQVLEWLSFY ILVLPCAYGP LGIVIIFATA LNAYHRPMSS LVINLCRLVL LMLPLAALGS YIDGVKGLLL ALPITNLLMG IACYYLAQRI CEPTKVTTAD AI
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