| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3332 |
|---|
| Symbol | |
|---|
| ID | 4253898 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 3980665 |
|---|
| End bp | 3981888 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 638119970 |
|---|
| Product | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase |
|---|
| Protein accession | YP_735455 |
|---|
| Protein GI | 113971662 |
|---|
| COG category | [C] Energy production and conversion
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0654] 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR01988] Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0546769 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAGTT CACAAGCCTA TGACATTGCC ATTGTGGGTG GCGGCATGGT GGGACTCGCC
ACCGCGATAG GATTGGCGCA GGCCAACTTG AATGTCGTCG TGATCGATGC TCAAAGCACC
CAAGCCGTGA GCGGTGAGCC AAGGCTTAGG GTCAGCGCGA TCAACAAAGC GAGCCAACGT
CTGCTCGAGC ACCTCGGCGC TTGGCACTAT GTCGATGCCA GCCGCGCGAC GCCCTATCAA
AAAATGGCGG TATGGGATAA AGACGGCTTT GGTAAAATCG CCTTCGATGC CAGTAGCATC
AGTGAACCTA GCCTTGGCGC CATTATCGAA AATGATGCCA TCAGCTACGC CCTCGCCAAG
CGTGCCAGTG AATTTGACAA TATCACCCAT ATCGAAAACC AACGCATAGA GCGTATCGCC
TTTGGTGAGC GTGAAGCTTG GTTGACCTTA GCCAATAGCG CCGATGCCGA AATCGAGAGC
GTTAGCGCCG CACTCGTAAT TGCCGCTGAT GGTGCTAATT CTTGGGTGCG CGAACAATGT
AAGATCCCGT TAACCTTCTG GGATTATGGC CATCATGCGA TTGTGGCGAC CATTCGCAGC
GAAATGCCGC ACCTTGCCAC CGCCCGCCAA GTGTTTTTGC AGGACGGCCC GCTGGCCTTC
TTGCCGTTAT ATGAAGACAA CCTCTGCTCC ATCGTCTGGT CAGTGCCGCC AGAGCGCGCC
ACCGAGTTAC TCGAGATGGC GCCAGAGCAG TTCGAGCGCA ATCTTACCGC CGCCTTCGAC
GGTCGCCTCG GCATTTGCAA GCTTGAGAGT GAACGCCAAG CCTTTCCACT GCGGATGCGC
TACGCCCGCC ATTTTGCCCG CCACCGTTTA GTGCTCGCGG GGGATGCGGC CCACACCATT
CATCCATTAG CTGGCCAGGG GGTAAACCTA GGCTTCCTCG ATGCCGCCAG CATTATCGAA
GTCATCGGCG AGCTACACGA GGCGGGTAAA GATATCGGTG ATTATGCCCA GCTGCGCGCC
CTTGAGCGTT GGCGCAAGGC GGATGCGATG GAGATGATTG CGGCGATGGA AGGCTTTAAG
CGCCTGTTCG AGGGTAGCAA TCCCCTTAAA AAAGCCATTC GCGATCTGGG ACTCAACCTC
GTTGATAATG TCGCTGGGCT GAAAACAGTG TTCATGCAAC AGGCCATGGG CAATAAGTCC
TCACTCCCCA AGTTATGTCG CTAG
|
|---|
| Protein sequence | MLSSQAYDIA IVGGGMVGLA TAIGLAQANL NVVVIDAQST QAVSGEPRLR VSAINKASQR
LLEHLGAWHY VDASRATPYQ KMAVWDKDGF GKIAFDASSI SEPSLGAIIE NDAISYALAK
RASEFDNITH IENQRIERIA FGEREAWLTL ANSADAEIES VSAALVIAAD GANSWVREQC
KIPLTFWDYG HHAIVATIRS EMPHLATARQ VFLQDGPLAF LPLYEDNLCS IVWSVPPERA
TELLEMAPEQ FERNLTAAFD GRLGICKLES ERQAFPLRMR YARHFARHRL VLAGDAAHTI
HPLAGQGVNL GFLDAASIIE VIGELHEAGK DIGDYAQLRA LERWRKADAM EMIAAMEGFK
RLFEGSNPLK KAIRDLGLNL VDNVAGLKTV FMQQAMGNKS SLPKLCR
|
|---|
| |