Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3284 |
Symbol | |
ID | 4253851 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3918688 |
End bp | 3922194 |
Gene Length | 3507 bp |
Protein Length | 1168 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638119923 |
Product | multi-sensor hybrid histidine kinase |
Protein accession | YP_735408 |
Protein GI | 113971615 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.431447 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCTGGCGT GGTTGTCTGT TGATACTTGG TGGATCAGCG TTATATCGAT TGCCTATTTG GCTGTGCTGT TTATTGTCGC CCAATGGGGG CAAAATCAGG CGATAGATCA ATGGCGTAAA CGGCCTTGGG TGTACAGTTT ATCCTTGGGG GTGTGTTGTA CTTCTTGGGC GTTTTACGGC ACGGTAGGGC AAGCGGCGAC CACGGGCGCT TGGTTAGCGC CCATCTACAT AGGTTCGATA ATCTGCCTAG TGCTGGCGTG GCCTATGTTG ATGCGCACAT TGCAGATCAT CAAAAGCCAA AACCTGACCT CGATTGCCGA CTTTATCGCC TGCCGCTTCG ACCGCTCGCC TAAAATTGCC GCCAGCGTTG CCATGGTGTC GCTTTTTGGC ACTATTCCCT ATATCGCGCT GCAACTGAGG GCGATAAGCA CCAGCTTCGA CCTCTTAACT GGTACTTTTC AATCTGGGAT CAGCACGGCG TTTATCGTTA CTATCGTGTT GATTATCTTT AGTATCTTAT TCGGTACACG GCAGCTTTCG GCCAGTAAAC AAAATCAAGG GTTGGTTCTG GCGATTGCCT TTAGCTCTAT CGTTAAGCTG TTTGCGCTCA CCACGGTTGG GTTGTTCGCG ACTTTCTATG TGTTTGATGG TTTTAGTGAT TTACTCGCTC GGGGTCAGCA TTTACCGCCG AGCTCTGAGG GTAATTCACT CTATTTTGTG CTGTCACAAA TTCTGCTGGG CGCCATTACC ATCTATGCGC TGCCTCAGGA ATTCCACATG ATGATGATTG AAAATCATCA TGCCAAAGAG TTAAAAGCCG CCCGTTGGAT GGTGCCACTC TATCTGCTGC TGATTAATGC CTTTGTATTG CCTATCGCGC TTGCGGGGCA GATTAGCTTT CCCGGCGGCA GTGTCGATGC CGACACCTAC GTGCTGACCT TGCCACTCTT CTATCAGCAA GCTTGGCTGG GGATCTTGGT GTATATTGGC GGCCTTGCGG CGGCAACGGC CATGGTCATT GTGGCGGCGA TTGTACTGAG CACCATGATT TCGACCGAGA TTTTGACTCC ATTGCTGCTG AGATTACCGA AATTTAGCTC GCAGCAGACG CCGCAGCTCG CAGGGATATT GCTCAATTTA CGGCGGATAT CGATAGCGGC GATTCTGCTA TCGGCCTTTG CCTTCGAGCG TTATATCGAT CAGCAGAATC ACTTGGCCAG CATTGGCTTG TTATCCTTTG TGCTGTTGTC GCAGTTTTTT CCCGCCGCCG TGGGCGCGCT CTATTGGCGC CGCGCTACCA CCCAAGGTGC CTTTTGGGGC ATGTTGATGG GCAGTTTAGT CTGGCTCTAT ACCTTGCTGC TACCCGCGAC CTTCCCCGAT GCACTCTGGG TCACCCAAGG GCTGTTGAAT ATTCCATGGT TAACTCCAAC CGCGCTATTT GGCCTGACGG GGCTGGATAA TATCAGCCAC GGCCTACTGT ATAGTTTGCT TGCGAATGTC GGTTGTTTTG TGCTGATTTC GTTGCTGAAA GAGCAGAGTG TGGGGGAAGT GCTTCAAGCC GATGTGTTTG TTAACCGTAA ACAGGTGGCG CTGGAAAGGC ACCTCTCGGT TGAGGATCTG GCGAGCCTAT TACACCGCTT TATCAATAAG GAAGAAGCCG ATGCCCTGCA GGCTAGGGCG AAAGTGCTTG GATCGGAATT GCAATTAGCC ACACGGCGCG AGGAGCTGGT GGATTACACC CGCCTTAAGC TGTCGGGGGT GCTTGGGTCT GCCTCGACGC GGATGGTGAT GAATGCCGCC TCACGCTCGC AGCAAATGCC GCTGGAGGAT GTGGTCAGCA TAGTCGATGA GGCTAACCAG ATCTTCGAGT TTAACCGCGA GTTGCTGCAA TCTGGGGTCG AAAACATCGA GCAGGGGATC AGCGTGGTCG ATGCCGATAT GCGCCTAGTT GCATGGAACA AACGCTATAT TGAATTGCTT GATTATCCTA AAGATTATGT CAAAGCAGGC ATACCGATAG AGACGCTGCT GAGATTTAAT ATTGAGCGCG GCATTATTGT GGGCGATGAG GCCCATGAGT TGGTGGAAAA GCGCCTCGCC CATATGCGTA GCGGCAGCCC ACACCATTTT CAGCGCACTA TGCTCGATGG CAAGGTGCTG GAGATCCGTG GTCAAGCCAT GCCGGGTGGC GGCTTTGTCA GTACCTTTAC CGACATTACC GCCCATATTC AGGCAGAAAA AGCCCTGCAA CTGGCTAACG AAACCCTCGA AAAGCGGGTC GAAAGCCGCA CAAGGGAACT CGCTAAAGCC AAGGCCGAAG CCGAGGCGGC CAATAGCAGT AAGACACGCT TCTTAGCGGC GGCGAGCCAC GATTTAATGC AGCCCTTTAA CGCGCTCACT CTGTTTACCG AGATGCTCAA ACAGCGGGTG ACGTCGACCG AACTCAAGGA TCTCGCCACC CATATCGAAG CCTCCTTAAA TGTGGTGGAG AGTCTGCTAT CCGATCTGGT GGAAATCTCC CGCCTCGATG GCGGCAGCCT TAAAACCGAA CAGAGCCAGT TTGCACTCGA CGATGTACTC TCGACCTTAG TGAATGAATT TAAAGCTTTA TCCGCCGAGC AGGGCATCGA TTTTTCCTAT CAGTTTTCCT CCTGCCTAGT GCAGAGCGAC CAACGTTTGC TGCGACGAAT TATTCAAAAC TTCCTCTCCA ATGCGTTCCA TTATTCCCCT GCGGGGGCAC TTAATCGGCA AACGCCGGTA TCAATGAATG CCAGCGCGGC CTTGGCTAAG CCAGTGGAAT CCGCCTTTGT ACCTAAGGTA TTACTGGGCG TGAGGCGGCT CGAACACAGC CTGCTTATCC AAGTGTGGGA CAATGGCCCC GGCATTCCTC AAGATAAGCA GCAGGCGATT TTTGGTGAGT TTGAGCGCCT CGAGCAAACG CGGGAGATCC CAGGGCTTGG ACTTGGGCTC GCCATTTGCG ACCGCATCGC TAAGTTACTC GGGCTTAAGA TTGCCTTGCA CTCTGAGGTG GGCAAAGGCA CTTGCTTTAG TGTCGAAGTG CCGCGAGTCT CTGCCCTGAA AAAACCTTCC AATGTCGTTA AACTTCGCAG TGAGGAAGAG TCTGTTAGCG ATAGCTTTAA TATCAGCGTG TTAGTCATAG ATAACGACGA GTTGATGTTA AAAGCCATCT CCTCTTTGTT GTTGGGCTGG GGCTGTCATG TACTCACCGC GCGGGATAAA ACCAGTGCCG AGCAGCAACT GGTACAGCAG GTGTTGCCTA AGCTTATCAT TGCCGATTAC CACTTGGATG ATGACCAAAA CGGTGTCGAT CTGGTGCAAA GCTTACTCAC TCATCCTGTG TTTAGCAGTC AGTGTCCGAC CTGCATTATC TGCTCGGCAG ATCCGTCTGA ATCTGTACGT CAACACACCA GCAGTGCACT GTTCAGTTTT GTGCGTAAAC CCGTTAAAGC CACCGCCTTA AAACGATTGA TTAAGCAATT GTCTTAA
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Protein sequence | MLAWLSVDTW WISVISIAYL AVLFIVAQWG QNQAIDQWRK RPWVYSLSLG VCCTSWAFYG TVGQAATTGA WLAPIYIGSI ICLVLAWPML MRTLQIIKSQ NLTSIADFIA CRFDRSPKIA ASVAMVSLFG TIPYIALQLR AISTSFDLLT GTFQSGISTA FIVTIVLIIF SILFGTRQLS ASKQNQGLVL AIAFSSIVKL FALTTVGLFA TFYVFDGFSD LLARGQHLPP SSEGNSLYFV LSQILLGAIT IYALPQEFHM MMIENHHAKE LKAARWMVPL YLLLINAFVL PIALAGQISF PGGSVDADTY VLTLPLFYQQ AWLGILVYIG GLAAATAMVI VAAIVLSTMI STEILTPLLL RLPKFSSQQT PQLAGILLNL RRISIAAILL SAFAFERYID QQNHLASIGL LSFVLLSQFF PAAVGALYWR RATTQGAFWG MLMGSLVWLY TLLLPATFPD ALWVTQGLLN IPWLTPTALF GLTGLDNISH GLLYSLLANV GCFVLISLLK EQSVGEVLQA DVFVNRKQVA LERHLSVEDL ASLLHRFINK EEADALQARA KVLGSELQLA TRREELVDYT RLKLSGVLGS ASTRMVMNAA SRSQQMPLED VVSIVDEANQ IFEFNRELLQ SGVENIEQGI SVVDADMRLV AWNKRYIELL DYPKDYVKAG IPIETLLRFN IERGIIVGDE AHELVEKRLA HMRSGSPHHF QRTMLDGKVL EIRGQAMPGG GFVSTFTDIT AHIQAEKALQ LANETLEKRV ESRTRELAKA KAEAEAANSS KTRFLAAASH DLMQPFNALT LFTEMLKQRV TSTELKDLAT HIEASLNVVE SLLSDLVEIS RLDGGSLKTE QSQFALDDVL STLVNEFKAL SAEQGIDFSY QFSSCLVQSD QRLLRRIIQN FLSNAFHYSP AGALNRQTPV SMNASAALAK PVESAFVPKV LLGVRRLEHS LLIQVWDNGP GIPQDKQQAI FGEFERLEQT REIPGLGLGL AICDRIAKLL GLKIALHSEV GKGTCFSVEV PRVSALKKPS NVVKLRSEEE SVSDSFNISV LVIDNDELML KAISSLLLGW GCHVLTARDK TSAEQQLVQQ VLPKLIIADY HLDDDQNGVD LVQSLLTHPV FSSQCPTCII CSADPSESVR QHTSSALFSF VRKPVKATAL KRLIKQLS
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