Gene Shewmr4_3284 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3284 
Symbol 
ID4253851 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3918688 
End bp3922194 
Gene Length3507 bp 
Protein Length1168 aa 
Translation table11 
GC content52% 
IMG OID638119923 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_735408 
Protein GI113971615 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms 
COG ID[COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.431447 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCTGGCGT GGTTGTCTGT TGATACTTGG TGGATCAGCG TTATATCGAT TGCCTATTTG 
GCTGTGCTGT TTATTGTCGC CCAATGGGGG CAAAATCAGG CGATAGATCA ATGGCGTAAA
CGGCCTTGGG TGTACAGTTT ATCCTTGGGG GTGTGTTGTA CTTCTTGGGC GTTTTACGGC
ACGGTAGGGC AAGCGGCGAC CACGGGCGCT TGGTTAGCGC CCATCTACAT AGGTTCGATA
ATCTGCCTAG TGCTGGCGTG GCCTATGTTG ATGCGCACAT TGCAGATCAT CAAAAGCCAA
AACCTGACCT CGATTGCCGA CTTTATCGCC TGCCGCTTCG ACCGCTCGCC TAAAATTGCC
GCCAGCGTTG CCATGGTGTC GCTTTTTGGC ACTATTCCCT ATATCGCGCT GCAACTGAGG
GCGATAAGCA CCAGCTTCGA CCTCTTAACT GGTACTTTTC AATCTGGGAT CAGCACGGCG
TTTATCGTTA CTATCGTGTT GATTATCTTT AGTATCTTAT TCGGTACACG GCAGCTTTCG
GCCAGTAAAC AAAATCAAGG GTTGGTTCTG GCGATTGCCT TTAGCTCTAT CGTTAAGCTG
TTTGCGCTCA CCACGGTTGG GTTGTTCGCG ACTTTCTATG TGTTTGATGG TTTTAGTGAT
TTACTCGCTC GGGGTCAGCA TTTACCGCCG AGCTCTGAGG GTAATTCACT CTATTTTGTG
CTGTCACAAA TTCTGCTGGG CGCCATTACC ATCTATGCGC TGCCTCAGGA ATTCCACATG
ATGATGATTG AAAATCATCA TGCCAAAGAG TTAAAAGCCG CCCGTTGGAT GGTGCCACTC
TATCTGCTGC TGATTAATGC CTTTGTATTG CCTATCGCGC TTGCGGGGCA GATTAGCTTT
CCCGGCGGCA GTGTCGATGC CGACACCTAC GTGCTGACCT TGCCACTCTT CTATCAGCAA
GCTTGGCTGG GGATCTTGGT GTATATTGGC GGCCTTGCGG CGGCAACGGC CATGGTCATT
GTGGCGGCGA TTGTACTGAG CACCATGATT TCGACCGAGA TTTTGACTCC ATTGCTGCTG
AGATTACCGA AATTTAGCTC GCAGCAGACG CCGCAGCTCG CAGGGATATT GCTCAATTTA
CGGCGGATAT CGATAGCGGC GATTCTGCTA TCGGCCTTTG CCTTCGAGCG TTATATCGAT
CAGCAGAATC ACTTGGCCAG CATTGGCTTG TTATCCTTTG TGCTGTTGTC GCAGTTTTTT
CCCGCCGCCG TGGGCGCGCT CTATTGGCGC CGCGCTACCA CCCAAGGTGC CTTTTGGGGC
ATGTTGATGG GCAGTTTAGT CTGGCTCTAT ACCTTGCTGC TACCCGCGAC CTTCCCCGAT
GCACTCTGGG TCACCCAAGG GCTGTTGAAT ATTCCATGGT TAACTCCAAC CGCGCTATTT
GGCCTGACGG GGCTGGATAA TATCAGCCAC GGCCTACTGT ATAGTTTGCT TGCGAATGTC
GGTTGTTTTG TGCTGATTTC GTTGCTGAAA GAGCAGAGTG TGGGGGAAGT GCTTCAAGCC
GATGTGTTTG TTAACCGTAA ACAGGTGGCG CTGGAAAGGC ACCTCTCGGT TGAGGATCTG
GCGAGCCTAT TACACCGCTT TATCAATAAG GAAGAAGCCG ATGCCCTGCA GGCTAGGGCG
AAAGTGCTTG GATCGGAATT GCAATTAGCC ACACGGCGCG AGGAGCTGGT GGATTACACC
CGCCTTAAGC TGTCGGGGGT GCTTGGGTCT GCCTCGACGC GGATGGTGAT GAATGCCGCC
TCACGCTCGC AGCAAATGCC GCTGGAGGAT GTGGTCAGCA TAGTCGATGA GGCTAACCAG
ATCTTCGAGT TTAACCGCGA GTTGCTGCAA TCTGGGGTCG AAAACATCGA GCAGGGGATC
AGCGTGGTCG ATGCCGATAT GCGCCTAGTT GCATGGAACA AACGCTATAT TGAATTGCTT
GATTATCCTA AAGATTATGT CAAAGCAGGC ATACCGATAG AGACGCTGCT GAGATTTAAT
ATTGAGCGCG GCATTATTGT GGGCGATGAG GCCCATGAGT TGGTGGAAAA GCGCCTCGCC
CATATGCGTA GCGGCAGCCC ACACCATTTT CAGCGCACTA TGCTCGATGG CAAGGTGCTG
GAGATCCGTG GTCAAGCCAT GCCGGGTGGC GGCTTTGTCA GTACCTTTAC CGACATTACC
GCCCATATTC AGGCAGAAAA AGCCCTGCAA CTGGCTAACG AAACCCTCGA AAAGCGGGTC
GAAAGCCGCA CAAGGGAACT CGCTAAAGCC AAGGCCGAAG CCGAGGCGGC CAATAGCAGT
AAGACACGCT TCTTAGCGGC GGCGAGCCAC GATTTAATGC AGCCCTTTAA CGCGCTCACT
CTGTTTACCG AGATGCTCAA ACAGCGGGTG ACGTCGACCG AACTCAAGGA TCTCGCCACC
CATATCGAAG CCTCCTTAAA TGTGGTGGAG AGTCTGCTAT CCGATCTGGT GGAAATCTCC
CGCCTCGATG GCGGCAGCCT TAAAACCGAA CAGAGCCAGT TTGCACTCGA CGATGTACTC
TCGACCTTAG TGAATGAATT TAAAGCTTTA TCCGCCGAGC AGGGCATCGA TTTTTCCTAT
CAGTTTTCCT CCTGCCTAGT GCAGAGCGAC CAACGTTTGC TGCGACGAAT TATTCAAAAC
TTCCTCTCCA ATGCGTTCCA TTATTCCCCT GCGGGGGCAC TTAATCGGCA AACGCCGGTA
TCAATGAATG CCAGCGCGGC CTTGGCTAAG CCAGTGGAAT CCGCCTTTGT ACCTAAGGTA
TTACTGGGCG TGAGGCGGCT CGAACACAGC CTGCTTATCC AAGTGTGGGA CAATGGCCCC
GGCATTCCTC AAGATAAGCA GCAGGCGATT TTTGGTGAGT TTGAGCGCCT CGAGCAAACG
CGGGAGATCC CAGGGCTTGG ACTTGGGCTC GCCATTTGCG ACCGCATCGC TAAGTTACTC
GGGCTTAAGA TTGCCTTGCA CTCTGAGGTG GGCAAAGGCA CTTGCTTTAG TGTCGAAGTG
CCGCGAGTCT CTGCCCTGAA AAAACCTTCC AATGTCGTTA AACTTCGCAG TGAGGAAGAG
TCTGTTAGCG ATAGCTTTAA TATCAGCGTG TTAGTCATAG ATAACGACGA GTTGATGTTA
AAAGCCATCT CCTCTTTGTT GTTGGGCTGG GGCTGTCATG TACTCACCGC GCGGGATAAA
ACCAGTGCCG AGCAGCAACT GGTACAGCAG GTGTTGCCTA AGCTTATCAT TGCCGATTAC
CACTTGGATG ATGACCAAAA CGGTGTCGAT CTGGTGCAAA GCTTACTCAC TCATCCTGTG
TTTAGCAGTC AGTGTCCGAC CTGCATTATC TGCTCGGCAG ATCCGTCTGA ATCTGTACGT
CAACACACCA GCAGTGCACT GTTCAGTTTT GTGCGTAAAC CCGTTAAAGC CACCGCCTTA
AAACGATTGA TTAAGCAATT GTCTTAA
 
Protein sequence
MLAWLSVDTW WISVISIAYL AVLFIVAQWG QNQAIDQWRK RPWVYSLSLG VCCTSWAFYG 
TVGQAATTGA WLAPIYIGSI ICLVLAWPML MRTLQIIKSQ NLTSIADFIA CRFDRSPKIA
ASVAMVSLFG TIPYIALQLR AISTSFDLLT GTFQSGISTA FIVTIVLIIF SILFGTRQLS
ASKQNQGLVL AIAFSSIVKL FALTTVGLFA TFYVFDGFSD LLARGQHLPP SSEGNSLYFV
LSQILLGAIT IYALPQEFHM MMIENHHAKE LKAARWMVPL YLLLINAFVL PIALAGQISF
PGGSVDADTY VLTLPLFYQQ AWLGILVYIG GLAAATAMVI VAAIVLSTMI STEILTPLLL
RLPKFSSQQT PQLAGILLNL RRISIAAILL SAFAFERYID QQNHLASIGL LSFVLLSQFF
PAAVGALYWR RATTQGAFWG MLMGSLVWLY TLLLPATFPD ALWVTQGLLN IPWLTPTALF
GLTGLDNISH GLLYSLLANV GCFVLISLLK EQSVGEVLQA DVFVNRKQVA LERHLSVEDL
ASLLHRFINK EEADALQARA KVLGSELQLA TRREELVDYT RLKLSGVLGS ASTRMVMNAA
SRSQQMPLED VVSIVDEANQ IFEFNRELLQ SGVENIEQGI SVVDADMRLV AWNKRYIELL
DYPKDYVKAG IPIETLLRFN IERGIIVGDE AHELVEKRLA HMRSGSPHHF QRTMLDGKVL
EIRGQAMPGG GFVSTFTDIT AHIQAEKALQ LANETLEKRV ESRTRELAKA KAEAEAANSS
KTRFLAAASH DLMQPFNALT LFTEMLKQRV TSTELKDLAT HIEASLNVVE SLLSDLVEIS
RLDGGSLKTE QSQFALDDVL STLVNEFKAL SAEQGIDFSY QFSSCLVQSD QRLLRRIIQN
FLSNAFHYSP AGALNRQTPV SMNASAALAK PVESAFVPKV LLGVRRLEHS LLIQVWDNGP
GIPQDKQQAI FGEFERLEQT REIPGLGLGL AICDRIAKLL GLKIALHSEV GKGTCFSVEV
PRVSALKKPS NVVKLRSEEE SVSDSFNISV LVIDNDELML KAISSLLLGW GCHVLTARDK
TSAEQQLVQQ VLPKLIIADY HLDDDQNGVD LVQSLLTHPV FSSQCPTCII CSADPSESVR
QHTSSALFSF VRKPVKATAL KRLIKQLS