Gene Shewmr4_3247 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3247 
Symbolalr 
ID4253815 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3878168 
End bp3879244 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content52% 
IMG OID638119887 
Productalanine racemase 
Protein accessionYP_735372 
Protein GI113971579 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0787] Alanine racemase 
TIGRFAM ID[TIGR00492] alanine racemase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000012106 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000136882 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGAAACCTT TTCCCCGAGC AGAAATTAGC AGTAGTGCAC TGCAAAACAA TCTCGCCGTC 
TTGCGTCAAC AGGCGAGTCG CAGCCAAGTG ATGGCTGTGG TGAAAGCCAA TGGTTATGGT
CATGGATTAT TAAATGTCGC CAACTGTTTA CACACTGCCG ATGGCTTTGG TCTAGCCCGT
TTAGAAGAGG CCTTAGAGCT GCGCGCCGGT GGCGTGAAGG CGCGCTTGTT ATTGCTTGAA
GGCTTCTTTC GTAGCACTGA TTTACCTTTG TTGGTGGCCC ACGATATCGA TACTGTGGTG
CACCATGAGT CTCAAATCGA GATGTTAGAG CAGGCGACGC TATCAAAACC TGTCACCGTA
TGGTTGAAAG TGGATTCTGG CATGCATCGT TTAGGCGTGA CGCCTGAGCA ATTTGCGCAG
GTGTATGCGC GTTTGACGGC CTGTGACAAT GTTGCCAAGC CCATACATTT GATGACTCAC
TTTGCCTGTG CCGATGAGCC TGAAAATCAT TACACCCAAG TGCAAATGCA AACCTTTAAC
CAGTTAACCG CGGATTTGCC TGGATTTAGA ACCTTAGCCA ATTCTGCGGG CGCCCTCTAT
TGGCCCAAAA GCCAAGGGGA TTGGATCCGC CCTGGAATCG CACTCTATGG TGTGTCTCCC
GTTACGGGGG ATTGCGGCGC CAATCATGGT CTGATCCCGG CGATGAACTT AGTCTCGCGT
TTGATTGCGG TGCGCGATCA CAAAGCGGGA CAACCCGTAG GTTATGGTTG TTATTGGACG
GCGAAGCAAG ATACTCGCCT TGGTGTCGTG GCCATTGGTT ACGGCGATGG TTATCCGCGC
AATGCACCAG AAGGCACGCC TGTGTGGGTG AATGGTCGCC GAGTGCCGAT TGTTGGTCGT
GTCTCTATGG ATATGTTAAC CGTTGATTTA GGCGCCGATG CGACAGACCT TGTGGGCGAT
GAAGCCCTGC TCTGGGGCGC AGCCTTGCCC GTTGAGGAAG TCGCCGAACA CATTGGCACT
ATCGCCTATG AGCTAGTGAC CAAACTTACC CCAAGGGTCG CTGTGTGTCT TGCATAA
 
Protein sequence
MKPFPRAEIS SSALQNNLAV LRQQASRSQV MAVVKANGYG HGLLNVANCL HTADGFGLAR 
LEEALELRAG GVKARLLLLE GFFRSTDLPL LVAHDIDTVV HHESQIEMLE QATLSKPVTV
WLKVDSGMHR LGVTPEQFAQ VYARLTACDN VAKPIHLMTH FACADEPENH YTQVQMQTFN
QLTADLPGFR TLANSAGALY WPKSQGDWIR PGIALYGVSP VTGDCGANHG LIPAMNLVSR
LIAVRDHKAG QPVGYGCYWT AKQDTRLGVV AIGYGDGYPR NAPEGTPVWV NGRRVPIVGR
VSMDMLTVDL GADATDLVGD EALLWGAALP VEEVAEHIGT IAYELVTKLT PRVAVCLA