Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3247 |
Symbol | alr |
ID | 4253815 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3878168 |
End bp | 3879244 |
Gene Length | 1077 bp |
Protein Length | 358 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638119887 |
Product | alanine racemase |
Protein accession | YP_735372 |
Protein GI | 113971579 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0787] Alanine racemase |
TIGRFAM ID | [TIGR00492] alanine racemase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000012106 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000136882 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | TTGAAACCTT TTCCCCGAGC AGAAATTAGC AGTAGTGCAC TGCAAAACAA TCTCGCCGTC TTGCGTCAAC AGGCGAGTCG CAGCCAAGTG ATGGCTGTGG TGAAAGCCAA TGGTTATGGT CATGGATTAT TAAATGTCGC CAACTGTTTA CACACTGCCG ATGGCTTTGG TCTAGCCCGT TTAGAAGAGG CCTTAGAGCT GCGCGCCGGT GGCGTGAAGG CGCGCTTGTT ATTGCTTGAA GGCTTCTTTC GTAGCACTGA TTTACCTTTG TTGGTGGCCC ACGATATCGA TACTGTGGTG CACCATGAGT CTCAAATCGA GATGTTAGAG CAGGCGACGC TATCAAAACC TGTCACCGTA TGGTTGAAAG TGGATTCTGG CATGCATCGT TTAGGCGTGA CGCCTGAGCA ATTTGCGCAG GTGTATGCGC GTTTGACGGC CTGTGACAAT GTTGCCAAGC CCATACATTT GATGACTCAC TTTGCCTGTG CCGATGAGCC TGAAAATCAT TACACCCAAG TGCAAATGCA AACCTTTAAC CAGTTAACCG CGGATTTGCC TGGATTTAGA ACCTTAGCCA ATTCTGCGGG CGCCCTCTAT TGGCCCAAAA GCCAAGGGGA TTGGATCCGC CCTGGAATCG CACTCTATGG TGTGTCTCCC GTTACGGGGG ATTGCGGCGC CAATCATGGT CTGATCCCGG CGATGAACTT AGTCTCGCGT TTGATTGCGG TGCGCGATCA CAAAGCGGGA CAACCCGTAG GTTATGGTTG TTATTGGACG GCGAAGCAAG ATACTCGCCT TGGTGTCGTG GCCATTGGTT ACGGCGATGG TTATCCGCGC AATGCACCAG AAGGCACGCC TGTGTGGGTG AATGGTCGCC GAGTGCCGAT TGTTGGTCGT GTCTCTATGG ATATGTTAAC CGTTGATTTA GGCGCCGATG CGACAGACCT TGTGGGCGAT GAAGCCCTGC TCTGGGGCGC AGCCTTGCCC GTTGAGGAAG TCGCCGAACA CATTGGCACT ATCGCCTATG AGCTAGTGAC CAAACTTACC CCAAGGGTCG CTGTGTGTCT TGCATAA
|
Protein sequence | MKPFPRAEIS SSALQNNLAV LRQQASRSQV MAVVKANGYG HGLLNVANCL HTADGFGLAR LEEALELRAG GVKARLLLLE GFFRSTDLPL LVAHDIDTVV HHESQIEMLE QATLSKPVTV WLKVDSGMHR LGVTPEQFAQ VYARLTACDN VAKPIHLMTH FACADEPENH YTQVQMQTFN QLTADLPGFR TLANSAGALY WPKSQGDWIR PGIALYGVSP VTGDCGANHG LIPAMNLVSR LIAVRDHKAG QPVGYGCYWT AKQDTRLGVV AIGYGDGYPR NAPEGTPVWV NGRRVPIVGR VSMDMLTVDL GADATDLVGD EALLWGAALP VEEVAEHIGT IAYELVTKLT PRVAVCLA
|
| |