Gene Shewmr4_3236 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3236 
SymboltolC 
ID4253804 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3867445 
End bp3868752 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content46% 
IMG OID638119876 
Productouter membrane channel protein 
Protein accessionYP_735361 
Protein GI113971568 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01844] type I secretion outer membrane protein, TolC family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.56355e-08 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value5.11139e-05 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAAATTTA AGATCCGTTC TCTATGCGCA GCATTAACTC TCGCGGCTTC CGCTCAAGCG 
GTTCAAGCAG ATGATTTACT GCAAATATAT CAACAAGCAC TGACGAGCGA CCCGCTAGTA
TTACAAGCAC AAGCTCAACG TAATGCCTTG TTTGAAAAGA TCGAACAAAA CCGTGCACCA
CTGTTACCGA CAATCAGCGC TAACGTGGGT TATGACAAAG CATGGAATGA TCCTAAGAGC
GATACCAGTG GATTAACCGG TAGCCTAAAG CTGAACCAAG TGATCTATGA TCACAGCGCT
TGGGTTGGTT TAAGTCTGGC CGAAAAAGCC GCTTCTCAAG CCGATTCAAA CTACGCTTCT
GCCCTGCAAA ATTTAATCAC TCGTGTGACT AAAGCCTACT TTGATGTGTT AACGGCGAAA
GATAACTACG AGTTCCAAGG CGCAGAGAAA CGTGCGATTG AACGTCAACT CGAGCAGACT
AAACAACGTT TTGCCGTAGG TTTAACTGCG ATTACCGACG TACATGAAGC GCAAGCTCAG
TATGACTTAG CCTCGGCTAC TGAAATTTTG GCTGAAAACA CGTTAGCCAA CAGCTACGAA
GCCCTGCGTG AAATCACAGG TATCGATCAC AAGACCATTA ACGTGCTCGA CACCAACCGT
TTCTCCGCGG TAACACCAGC ACCGACCTCA TCGAGTGAGT GGCTAAAGAT TGCTGAAACC
AACAGCGTCG ATCTGATGAC TCAACGCATC GGTAAAGATA TCGCCCAAGA GACCATCAGC
CTATACAAAG CGGGCCACAT GCCATCTCTT AGCTTAAACG CTGGCTATAA CAAAGGGTTA
GAGCAAAAAA CTGGCGACGT GAATGAGCCT GATTTTGACA ATGTGAACGT TGGTGTGAAC
TTAAGCATTC CTATTTTTGA AGGCTTTAAA GTCACCTCAC AGGTCAAAGA AGCGCAATTC
CAATACGTGG AAGCGAGCGA GAAGTTAGAG CAAACCTACC GCAGTGTGGT GAAAAACGTT
CGTAACAACT ACAACAACGT AGGCGCTTCT ATTAGCTCAA TCCGTGCTTA TGAGCAGTCA
GTGATTTCAT CTGAAAGTGC GTTAAAGGCA ACACAAGCGG GCTTTGAAGT CGGTACTCGT
ACTATTGTTG ACGTACTGAA CCGTACCCGT GACCTGTACG ACTCAAAACG TAAATTGTCG
GATGCACGCT ATAGCTACAT CAACTCAATT ATTGCGTTGA AACAAGCTGC TGGCACCTTA
AATGAAGACG ATGTTATCTC TATCAACAAC GGTCTAAAAG CCGAATAA
 
Protein sequence
MKFKIRSLCA ALTLAASAQA VQADDLLQIY QQALTSDPLV LQAQAQRNAL FEKIEQNRAP 
LLPTISANVG YDKAWNDPKS DTSGLTGSLK LNQVIYDHSA WVGLSLAEKA ASQADSNYAS
ALQNLITRVT KAYFDVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLASATEIL AENTLANSYE ALREITGIDH KTINVLDTNR FSAVTPAPTS SSEWLKIAET
NSVDLMTQRI GKDIAQETIS LYKAGHMPSL SLNAGYNKGL EQKTGDVNEP DFDNVNVGVN
LSIPIFEGFK VTSQVKEAQF QYVEASEKLE QTYRSVVKNV RNNYNNVGAS ISSIRAYEQS
VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSI IALKQAAGTL
NEDDVISINN GLKAE