Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3172 |
Symbol | ipk |
ID | 4253742 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3790755 |
End bp | 3791609 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 638119813 |
Product | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase |
Protein accession | YP_735299 |
Protein GI | 113971506 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1947] 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase |
TIGRFAM ID | [TIGR00154] 4-diphosphocytidyl-2C-methyl-D-erythritol kinase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0254456 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.902117 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGAATG AGATTTCACG CAATTGGCCC GCGCCCGCCA AATTAAATCT GTTTCTGCAT ATCAACGGAC GCCGCGCCGA CGGTTACCAT GAGTTGCAAA CCCTGTTTCA GTTTATCGAT TGTTGCGATC TGCTCGATTT TCGGGTGACA CAAACACCTG AGCAGATATT GCACTCGGAC ATGTCAGCCG TTGTCGCGGA TAGCGATAAC TTAATTCTGC GAGCCGCAAA ATCATTACAA CAGGCGACAG GTTATCCTGG CGGTGCCGAA ATCTGGCTCG AAAAACGTTT ACCTATGGGT GGCGGTTTAG GCGGCGGCTC CTCGGATGCT GCCACCACGC TCGTGGCGTT AAATCAATTG TGGGATACCC AATTATCTAA CGATGAATTG GCGACGATTG GATTAAAACT CGGTGCCGAT ATCCCTGTTT TTATTCGCGG TTTCGCGGCA TTTGCCGAAG GTGTTGGCGA ACGTTTACAG GCGGTGACGC CCACTGAGTT TTGGTATTTA GTGATAGCGC CCGATGCCCA TGTTTCAACC GCTGCTGTGT TCCAAGATCC TTTGCTACCC CGCAATACAC CTAAGCTTGG CATCGACACG TTAATGAGCC AACCTTGGGC AAATGATTGC CAAGATCTGG TCGTTTCCAA ATACCCTCAA GTTGCCAAGG CCTTAGCCTG GCTGCTAGAA TATGCGCCGT CGAGAATGAC CGGAACGGGC GCATGCGTGT TTGGGGAGTT TTCTTCGCAG CAGCAAGCTC TCGCAGCCTT GGCGAAATTA CCGTCTGATA TGCAAGGATT TGTTGCAAAA GGGATGAATA TTTCGCCGCT CATAGTGCGA CTCAATCGTC CATAA
|
Protein sequence | MSNEISRNWP APAKLNLFLH INGRRADGYH ELQTLFQFID CCDLLDFRVT QTPEQILHSD MSAVVADSDN LILRAAKSLQ QATGYPGGAE IWLEKRLPMG GGLGGGSSDA ATTLVALNQL WDTQLSNDEL ATIGLKLGAD IPVFIRGFAA FAEGVGERLQ AVTPTEFWYL VIAPDAHVST AAVFQDPLLP RNTPKLGIDT LMSQPWANDC QDLVVSKYPQ VAKALAWLLE YAPSRMTGTG ACVFGEFSSQ QQALAALAKL PSDMQGFVAK GMNISPLIVR LNRP
|
| |